View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0192_low_6 (Length: 328)
Name: NF0192_low_6
Description: NF0192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0192_low_6
Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 158 - 318
Target Start/End: Complemental strand, 48924204 - 48924044
Alignment:
Q
158
tgtcttcaaaacataaatgaatgatattattattattagacttattttcgatggtaattcactcccaatggacatccgacatccattttccatatattca
257
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48924204
tgtcttcaaaacataaatgaatgatattattattattagacttattttcgatggtaattcactcccaatggacatccgacatccattttccatatattca
48924105
T
Q
258
catatttagaatattaaagctatgtttgttgttttttgaatgctgaaagtgaagttctgtg
318
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48924104
catatttagaatattaaagctatgtttgttgttttttgaatgctgaaagtgaagttctgtg
48924044
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 48924300 - 48924188
Alignment:
Q
30
ttaagtaacctatgtgaagtgtgatgtatcgttgcatccttttctgaattgtatgttaggtgtttgataaaaaatgtctaatttctaacctctgagattg
129
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
48924300
ttaagtaacctatgtgaagtgtgatgtatcgttgcatccttttctgaattgtatgttaggtgtttgat--aaaatgtctaatttctaacctctgagattg
48924203
T
Q
130
tcttcaaaacataaa
144
Q
|||||||||||||||
T
48924202
tcttcaaaacataaa
48924188
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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