View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0192_low_7 (Length: 328)
Name: NF0192_low_7
Description: NF0192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0192_low_7 |
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| [»] scaffold0415 (1 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 87 - 255
Target Start/End: Original strand, 40812159 - 40812327
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40812159 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
40812258 |
T |
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| Q |
187 |
aacatccaaaagctagtaatctctttttgatggcgcagagaacattgccttgtagatccattagattca |
255 |
Q |
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| T |
40812259 |
aacatccaaaaactagtaatctctttttgatggtgcagagaacattgccttgtagatccatgagattca |
40812327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 40807062 - 40807228
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | ||| | ||||| ||||||||||||| |||||||| |
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| T |
40807062 |
attttcccagagaaaaccttatgacatcttttaactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttccc |
40807161 |
T |
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| Q |
187 |
aacatccaaaagctagtaatctctttttgatggcgcagagaacattgccttgtagatccattagatt |
253 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||| |||||||||| ||||||| ||||| |
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| T |
40807162 |
aacatccaaaagctagtaatgtctttttgatggtgcagagaagattgccttgttgatccatgagatt |
40807228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 40817341 - 40817486
Alignment:
| Q |
110 |
acatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaagctagtaatctc |
209 |
Q |
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||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||| || |
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| T |
40817341 |
acatcttttaacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaatgtc |
40817440 |
T |
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| Q |
210 |
tttttgatggcgcagagaacattgccttgtagatccattagattca |
255 |
Q |
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|||||||||| ||| |||| ||| |||||||||||||||||||||| |
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| T |
40817441 |
tttttgatggtgcaaagaagattcccttgtagatccattagattca |
40817486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 40825884 - 40826007
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
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|||||||| || | ||||||||||||||||||||||| ||||||||||| |||| ||| ||||| ||| | |||||||||||||||||||||||||||| |
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| T |
40825884 |
attttccctgatataaccttatgacatcttttaactttgaaccatggttgctcctcttgccttcttaaacttgaattgttgcaatatttgtggccttccc |
40825983 |
T |
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| Q |
187 |
aacatccaaaagctagtaatctct |
210 |
Q |
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| T |
40825984 |
agcatccaaaagctagtaatctct |
40826007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 40805357 - 40805463
Alignment:
| Q |
104 |
cttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaagctagt |
203 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |||||||||| | |||| ||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
40805357 |
cttatgacatcttttgacttgaaaccatggttgctcctcctggcttctaatattagagttgctgcaatatttgtgtccttcccaacatccaaaagctagt |
40805456 |
T |
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| Q |
204 |
aatctct |
210 |
Q |
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||||||| |
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| T |
40805457 |
aatctct |
40805463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 15023 - 14878
Alignment:
| Q |
110 |
acatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaagctagtaatctc |
209 |
Q |
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||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||| || |
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| T |
15023 |
acatcttttaacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaatgtc |
14924 |
T |
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| Q |
210 |
tttttgatggcgcagagaacattgccttgtagatccattagattca |
255 |
Q |
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|||||||||| ||| |||| ||| |||||||||||||||||||||| |
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| T |
14923 |
tttttgatggtgcaaagaagattcccttgtagatccattagattca |
14878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 7567 - 7399
Alignment:
| Q |
87 |
attttcccagagaaaaccttatgacatcttttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttccc |
186 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | ||| | ||||| ||||||||||||| |||||||| |
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| T |
7567 |
attttcccagagaaaaccttatgacatcttttaactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttccc |
7468 |
T |
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| Q |
187 |
aacatcc-aaaagctagtaatctc-tttttgatggcgcagagaacattgccttgtagatccattagatt |
253 |
Q |
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||||||| ||||||||||||| || |||||||||| |||||||| |||||||||| ||||||| ||||| |
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| T |
7467 |
aacatccaaaaagctagtaatgtcttttttgatggtgcagagaagattgccttgttgatccatgagatt |
7399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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