View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0193-INSERTION-1 (Length: 256)

Name: NF0193-INSERTION-1
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0193-INSERTION-1
NF0193-INSERTION-1
[»] chr1 (1 HSPs)
chr1 (1-256)||(47395285-47395540)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 47395540 - 47395285
Alignment:
Q  1 attattacaattggtggaacaatttttgactctaagcaaagtgattattgnnnnnnnaattttaaaatgctcgtcttttttggtgtccaagtaggtctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  47395540 attattacaattggtggaacaatttttgactctaagcaaagtgattattgtttttttaattttaaaatgctcgtcttttttggtgtccaagtaggtctta 47395441  T
Q  101 cattggctttctaaaaccttcgtgcgagaagaaagtatttatttctttttcacacaaattaaagttaattaaatacctagctagatgcttaacgaacaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47395440 cattggctttctaaaaccttcgtgcgagaagaaagtatttatttctttttcacacaaattaaagttaattaaatacctagctagatgcttaacgaacaag 47395341  T
Q  201 aaaaccagctgtttcttttgccaagaggccacaaactccactctaatgtgcatccc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47395340 aaaaccagctgtttcttttgccaagaggccacaaactccactctaatgtgcatccc 47395285  T

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