View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193-INSERTION-2 (Length: 510)
Name: NF0193-INSERTION-2
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193-INSERTION-2 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: scaffold0245 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 23939 - 23409
Alignment:
| Q |
1 |
tttcacaatccgttaatctcgccgccgcagttaccgccacacgtgaatgtaactaacttcgccgtccaccgccgtaaccgttttcctattcgttcattcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23939 |
tttcacaatccgttaatctcgccgccgcagttaccgccacacgtgaatgtaactaacttcgccgtccaccgccgtaaccgttttcctattcgttcattca |
23840 |
T |
|
| Q |
101 |
gtgttatcaacaatgtaactaacttcacgaatttgaaatccgttaacgttacgtctgttaacggt---------------------gttggaaggatttc |
179 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23839 |
gtgttatcaacaatgtaactaacttcacgaatttgaaatccgttaacgttacgtctgttaacggttttggttctccgtttaacggtgttggaaggatttc |
23740 |
T |
|
| Q |
180 |
gccattctcgtcgactgcgacggagaagaagaataaacggaagaaaacggtaaaagctgttgcagttcgtggtaaggataaggatgtgaaatctagtgaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739 |
gccattctcgtcgactgcgacggagaagaagaataaacggaagaaaacggtaaaagctgttgcagttcgtggtaaggataaggatgtgaaatctagtgaa |
23640 |
T |
|
| Q |
280 |
tctgtggttaaagatgatgttaagaatgtggatttagggaaaactggtttgagtgaagagattaagagtgatgaaaaggatttgaaagttaatgctgtta |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23639 |
tctgtggttaaagatgatgttaagaatgtggatttagggaaaactggtttgagtgaagagattaagagtgatgaaaaggatttgaaagttaatgctgtta |
23540 |
T |
|
| Q |
380 |
ggaagaagaa---gaagccggtgcggagtaagaaaaaagacgatgttaagatttctccggctgtaactgattcggtggaagtggttggtgaagtagatgt |
476 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
23539 |
agaagaagaagaagaagccggtgcggagtaagaaaaaagacgatgttaagatttctcccgctgtaactgattcggtggaagtggttggtgaagtagaagt |
23440 |
T |
|
| Q |
477 |
ttcgaaaaaatcggcttccaaagggaagaag |
507 |
Q |
| |
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| T |
23439 |
ttcgaaaaaatcggcttccaaagggaagaag |
23409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 1296029 - 1295499
Alignment:
| Q |
1 |
tttcacaatccgttaatctcgccgccgcagttaccgccacacgtgaatgtaactaacttcgccgtccaccgccgtaaccgttttcctattcgttcattcg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1296029 |
tttcacaatccgttaatctcgccgccgcagttaccgccacacgtgaatgtaactaacttcgccgtccaccgccgtaaccgttttcctattcgttcattca |
1295930 |
T |
|
| Q |
101 |
gtgttatcaacaatgtaactaacttcacgaatttgaaatccgttaacgttacgtctgttaacggt---------------------gttggaaggatttc |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1295929 |
gtgttatcaacaatgtaactaacttcacgaatttgaaatccgttaacgttacgtctgttaacggttttggttctccgtttaacggtgttggaaggatttc |
1295830 |
T |
|
| Q |
180 |
gccattctcgtcgactgcgacggagaagaagaataaacggaagaaaacggtaaaagctgttgcagttcgtggtaaggataaggatgtgaaatctagtgaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1295829 |
gccattctcgtcgactgcgacggagaagaagaataaacggaagaaaacggtaaaagctgttgcagttcgtggtaaggataaggatgtgaaatctagtgaa |
1295730 |
T |
|
| Q |
280 |
tctgtggttaaagatgatgttaagaatgtggatttagggaaaactggtttgagtgaagagattaagagtgatgaaaaggatttgaaagttaatgctgtta |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1295729 |
tctgtggttaaagatgatgttaagaatgtggatttagggaaaactggtttgagtgaagagattaagagtgatgaaaaggatttgaaagttaatgctgtta |
1295630 |
T |
|
| Q |
380 |
ggaagaagaa---gaagccggtgcggagtaagaaaaaagacgatgttaagatttctccggctgtaactgattcggtggaagtggttggtgaagtagatgt |
476 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
1295629 |
agaagaagaagaagaagccggtgcggagtaagaaaaaagacgatgttaagatttctcccgctgtaactgattcggtggaagtggttggtgaagtagaagt |
1295530 |
T |
|
| Q |
477 |
ttcgaaaaaatcggcttccaaagggaagaag |
507 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
1295529 |
ttcgaaaaaatcggcttccaaagggaagaag |
1295499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 1314654 - 1314561
Alignment:
| Q |
35 |
cgccacacgtgaatgtaactaacttcgccgtccaccgccgtaaccgttttcctattcgttcattcggtgttatcaacaatgtaactaacttcac |
128 |
Q |
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|||| |||||||||||||||||||||||| |||| ||| ||||||| ||||| ||||||||||| | |||||| ||| |||||||||||||| |
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| T |
1314654 |
cgccgcacgtgaatgtaactaacttcgccctccaacgctgtaaccgctttccgtttcgttcattcagctttatcagcaacgtaactaacttcac |
1314561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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