View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0193_high_19 (Length: 277)
Name: NF0193_high_19
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 32615233 - 32614990
Alignment:
| Q |
1 |
gaaaatggccattagtgtcatttaattaataatgattcctctttaaagagggataactattgtcataaaacatcctttcttaagataaaatatgatcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
32615233 |
gaaaatggccattagtgtcatttaattaataataattcctccttaaagagggataactattgtcataaaccat-atttcttaagataaaataagatcaat |
32615135 |
T |
|
| Q |
101 |
ttctccatgagatgtcagctcacacgtaagagtttaatcttgtaacctcaagnnnnnnnngttcaatttatgtcagtgagccggttgaaaatggccatta |
200 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||| | ||| ||||||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
32615134 |
ttctccatgaggtgtcagctcacgcgtaagagtttaatcttgtaactttaag-agaagaagttcaatttctgtcagtgagccagttgaaaacggccatta |
32615036 |
T |
|
| Q |
201 |
gtgtcatttgattaataacaattcctccttaaagaagtgataacta |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32615035 |
gtgtcatttgattaataacaatttctccttaaagaagtgataacta |
32614990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 32615259 - 32615173
Alignment:
| Q |
161 |
gttcaatttatgtcagtgagccggttgaaaatggccattagtgtcatttgattaataacaattcctccttaaagaagtgataactatt |
248 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
32615259 |
gttcaatttctctcagtgagccagttgaaaatggccattagtgtcatttaattaataataattcctccttaaag-agggataactatt |
32615173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 32615368 - 32615296
Alignment:
| Q |
80 |
ttaagataaaatatgatcaatttctccatgagatgtcagctcacacgtaagagtttaatcttgtaacctcaag |
152 |
Q |
| |
|
||||||||||||| |||||||||||||| || || ||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
32615368 |
ttaagataaaataaaatcaatttctccataaggtgacagcttaaacgtaagagtttgatcttgtaacctcaag |
32615296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 35577 times since January 2019
Visitors: 1230