View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0193_high_23 (Length: 257)

Name: NF0193_high_23
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0193_high_23
NF0193_high_23
[»] chr7 (13 HSPs)
chr7 (34-257)||(3615358-3615581)
chr7 (34-75)||(2204018-2204059)
chr7 (34-75)||(17185165-17185206)
chr7 (34-75)||(42013598-42013639)
chr7 (34-78)||(45075205-45075249)
chr7 (29-71)||(10552700-10552742)
chr7 (29-75)||(42736961-42737007)
chr7 (34-75)||(1805114-1805155)
chr7 (34-75)||(2206309-2206350)
chr7 (34-75)||(22292805-22292846)
chr7 (35-71)||(41957697-41957733)
chr7 (34-74)||(47943253-47943293)
chr7 (34-74)||(47948683-47948723)
[»] chr2 (14 HSPs)
chr2 (30-75)||(19507798-19507843)
chr2 (34-78)||(10602234-10602278)
chr2 (34-75)||(6978817-6978858)
chr2 (34-75)||(22712226-22712267)
chr2 (34-75)||(23719308-23719349)
chr2 (34-75)||(24106980-24107021)
chr2 (34-75)||(13329744-13329785)
chr2 (34-75)||(15630469-15630510)
chr2 (29-75)||(2121323-2121369)
chr2 (34-75)||(5422315-5422356)
chr2 (29-74)||(17112305-17112350)
chr2 (34-75)||(31297640-31297681)
chr2 (34-75)||(31500780-31500821)
chr2 (29-74)||(34519902-34519947)
[»] chr4 (25 HSPs)
chr4 (34-75)||(10466540-10466581)
chr4 (37-75)||(2332757-2332795)
chr4 (34-75)||(2567256-2567297)
chr4 (34-75)||(9981107-9981148)
chr4 (35-75)||(36774643-36774683)
chr4 (29-76)||(12028389-12028436)
chr4 (29-75)||(46518348-46518394)
chr4 (29-75)||(51025989-51026035)
chr4 (34-75)||(205271-205312)
chr4 (34-75)||(36390756-36390797)
chr4 (34-75)||(40729235-40729276)
chr4 (34-75)||(48093238-48093279)
chr4 (34-75)||(49792983-49793024)
chr4 (34-75)||(52073507-52073548)
chr4 (34-72)||(9617212-9617250)
chr4 (38-88)||(43890418-43890468)
chr4 (34-75)||(9618435-9618476)
chr4 (34-75)||(12024501-12024542)
chr4 (37-78)||(20902524-20902565)
chr4 (34-75)||(21168417-21168458)
chr4 (34-75)||(26592863-26592904)
chr4 (34-75)||(35142840-35142881)
chr4 (34-75)||(45936606-45936647)
chr4 (34-75)||(49790617-49790658)
chr4 (34-75)||(51029616-51029657)
[»] chr3 (24 HSPs)
chr3 (34-75)||(10036826-10036867)
chr3 (29-75)||(40469252-40469298)
chr3 (34-75)||(34470241-34470282)
chr3 (38-75)||(51017283-51017320)
chr3 (37-75)||(37268112-37268150)
chr3 (34-75)||(11377182-11377223)
chr3 (34-75)||(30194527-30194568)
chr3 (34-75)||(37718097-37718138)
chr3 (34-75)||(42321719-42321760)
chr3 (34-75)||(45031513-45031554)
chr3 (34-75)||(45266541-45266582)
chr3 (34-75)||(52560282-52560323)
chr3 (34-74)||(21196608-21196648)
chr3 (34-74)||(50457430-50457470)
chr3 (34-73)||(54922589-54922628)
chr3 (34-72)||(54921405-54921443)
chr3 (34-75)||(30191665-30191706)
chr3 (188-257)||(34732003-34732072)
chr3 (34-75)||(38108772-38108813)
chr3 (34-75)||(46412470-46412511)
chr3 (34-75)||(48098164-48098205)
chr3 (34-66)||(44926782-44926814)
chr3 (39-75)||(45265460-45265496)
chr3 (34-66)||(46415237-46415269)
[»] chr1 (14 HSPs)
chr1 (34-75)||(17684490-17684531)
chr1 (34-75)||(39855426-39855467)
chr1 (34-75)||(12792331-12792372)
chr1 (39-75)||(33286249-33286285)
chr1 (37-75)||(51936620-51936658)
chr1 (126-211)||(24722559-24722644)
chr1 (29-75)||(28861925-28861971)
chr1 (34-75)||(4911554-4911595)
chr1 (34-75)||(15356399-15356440)
chr1 (34-75)||(23344502-23344543)
chr1 (27-76)||(37777213-37777262)
chr1 (30-75)||(42463201-42463246)
chr1 (34-70)||(37505030-37505066)
chr1 (29-73)||(46201225-46201269)
[»] chr5 (18 HSPs)
chr5 (34-78)||(22965781-22965825)
chr5 (34-75)||(8214324-8214365)
chr5 (30-75)||(27014674-27014719)
chr5 (34-72)||(12936260-12936298)
chr5 (34-72)||(12950415-12950453)
chr5 (37-75)||(22964667-22964705)
chr5 (34-75)||(1690357-1690398)
chr5 (34-71)||(7483698-7483735)
chr5 (34-75)||(7486625-7486666)
chr5 (34-75)||(36351296-36351337)
chr5 (34-75)||(39939961-39940002)
chr5 (127-211)||(27408236-27408320)
chr5 (34-76)||(2401759-2401801)
chr5 (34-72)||(2897954-2897992)
chr5 (34-76)||(2899103-2899145)
chr5 (34-75)||(7263385-7263426)
chr5 (34-75)||(10825306-10825347)
chr5 (34-74)||(34394221-34394261)
[»] chr8 (10 HSPs)
chr8 (34-75)||(42167150-42167191)
chr8 (29-75)||(16583190-16583236)
chr8 (34-71)||(19243194-19243231)
chr8 (34-71)||(19316378-19316415)
chr8 (37-74)||(26488536-26488573)
chr8 (34-75)||(33074867-33074908)
chr8 (34-75)||(2809252-2809293)
chr8 (34-75)||(8036250-8036291)
chr8 (34-75)||(40494118-40494159)
chr8 (34-75)||(40678297-40678338)
[»] chr6 (3 HSPs)
chr6 (34-76)||(9904659-9904701)
chr6 (34-75)||(5620794-5620835)
chr6 (29-73)||(22868436-22868480)
[»] scaffold0004 (2 HSPs)
scaffold0004 (34-75)||(130571-130612)
scaffold0004 (34-75)||(127204-127245)
[»] scaffold1903 (1 HSPs)
scaffold1903 (34-75)||(276-317)
[»] scaffold1043 (1 HSPs)
scaffold1043 (34-75)||(2604-2645)
[»] scaffold0589 (1 HSPs)
scaffold0589 (34-75)||(5581-5622)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 3615358 - 3615581
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttcccagagaaaaaccctagcgccattcaattttgaaaaaccctaaaccctaaagaaagct 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  3615358 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttcccagagaaaaaccctagcgccgttcagttttgaaaaaccctaaaccctaaagaaagct 3615457  T
Q  134 tttgggttgatttggcatgccactatatggacgatatggaggtagagaaacgtgaggattttcaaaaaccaattcaagtgtattgatgagttggtggatg 233  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3615458 tttgggttgatttggcatgccactatatggacgatttggaggtagagaaacgtgaggattttcaaaaaccaattcaagtgtattgatgagttggtggatg 3615557  T
Q  234 aggttaagactttgtcttggtgtt 257  Q
    ||||||||||||||||||||||||    
T  3615558 aggttaagactttgtcttggtgtt 3615581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 2204059 - 2204018
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2204059 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 2204018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 17185165 - 17185206
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  17185165 ttgtgtcaataggaagtattcattgtcgaaaaagcaattttc 17185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 42013639 - 42013598
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  42013639 ttgtgtcaataggaagatttcattgtcaaaaaagcaattttc 42013598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 45075249 - 45075205
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttccca 78  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||    
T  45075249 ttgtgtcaataggaagttttcattgtcagaaaaacaattttccca 45075205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 10552742 - 10552700
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaat 71  Q
    |||| |||||||||||||||||||||  |||||||||||||||    
T  10552742 attacttgtgtcaataggaagtattccatgtcaaaaaagcaat 10552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 42736961 - 42737007
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||| |||||||||||||||||||||  |||||||||| ||||||||    
T  42736961 attacttgtgtcaataggaagtattctatgtcaaaaaaacaattttc 42737007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 1805114 - 1805155
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||  |||||||||||||||||| |||||    
T  1805114 ttgtgtcaataggaagatttcattgtcaaaaaagcatttttc 1805155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 2206309 - 2206350
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  2206309 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 2206350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 22292805 - 22292846
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||| || |||||||||||||||||| |||||||    
T  22292805 ttgtgtcaatagaaaatattcattgtcaaaaaagtaattttc 22292846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 41957733 - 41957697
Alignment:
Q  35 tgtgtcaataggaagtattcattgtcaaaaaagcaat 71  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41957733 tgtgtcaataggaaggtttcattgtcaaaaaagcaat 41957697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 47943293 - 47943253
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    |||||||||||| || ||||||||||||||||| |||||||    
T  47943293 ttgtgtcaatagaaaatattcattgtcaaaaaatcaatttt 47943253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 47948723 - 47948683
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    |||||||||||| || ||||||||||||||||| |||||||    
T  47948723 ttgtgtcaatagaaaatattcattgtcaaaaaatcaatttt 47948683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 19507843 - 19507798
Alignment:
Q  30 ttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19507843 ttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 19507798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 10602234 - 10602278
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttccca 78  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  10602234 ttgtgtcaataggaagtattcaatgtcaaaaaagcaattttccca 10602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 6978817 - 6978858
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  6978817 ttgtgtcaataggaaatattcattgtcaaaaaagcaattttc 6978858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 22712226 - 22712267
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  22712226 ttgtgtcaataggaattattcattgtcaaaaaagcaattttc 22712267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 23719349 - 23719308
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  23719349 ttgtgtcaataggaagtattcattgtcaaaaaaggaattttc 23719308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 24107021 - 24106980
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  24107021 ttgtgtcaataggaagtattcattgtcaaaaaaggaattttc 24106980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 13329785 - 13329744
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  13329785 ttgtgttaataggaagtattcattgtcaaaaaaacaattttc 13329744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 15630469 - 15630510
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  15630469 ttgtgtcaataggaagtattcaatgtcaaaaaagcaactttc 15630510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 2121323 - 2121369
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||| |||||||||||||||||||||  |||||||||| ||||||||    
T  2121323 attacttgtgtcaataggaagtattccatgtcaaaaaaacaattttc 2121369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 5422315 - 5422356
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  5422315 ttgtgtcaatagaaagtattcgctgtcaaaaaagcaattttc 5422356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 17112350 - 17112305
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    |||| ||||||||||||||||||||   ||||||||||||||||||    
T  17112350 attacttgtgtcaataggaagtattttatgtcaaaaaagcaatttt 17112305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 31297681 - 31297640
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  31297681 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 31297640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 31500821 - 31500780
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  31500821 ttgtgtcaatatgaagttttcattgtcagaaaagcaattttc 31500780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 34519947 - 34519902
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    |||| ||||||||||||||||||||   ||||||||||||||||||    
T  34519947 attacttgtgtcaataggaagtattttatgtcaaaaaagcaatttt 34519902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 10466581 - 10466540
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10466581 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 10466540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 2332795 - 2332757
Alignment:
Q  37 tgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2332795 tgtcaataggaagtattcattgtcaaaaaagcaattttc 2332757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 2567297 - 2567256
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  2567297 ttgtgtcaataggaagtattcattgtcaaaaaaacaattttc 2567256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 9981148 - 9981107
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  9981148 ttgtgtcaataggaagtattccttgtcaaaaaagcaattttc 9981107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 36774683 - 36774643
Alignment:
Q  35 tgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  36774683 tgtgtcaataggaagtattcattgtcaaaaaaacaattttc 36774643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 12028389 - 12028436
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 76  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||    
T  12028389 attatttgtgtcaataggaagtattccatgtcaaaaaagcaattttcc 12028436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 46518348 - 46518394
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  46518348 attacttgtgtcaataggaagtattccatgtcaaaaaagcaattttc 46518394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 51026035 - 51025989
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  51026035 attacttgtgtcaataggaagtattctatgtcaaaaaagcaattttc 51025989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 205271 - 205312
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  205271 ttgtgtcaataggaaatattcattgtgaaaaaagcaattttc 205312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 36390797 - 36390756
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  36390797 ttgtgtcaataggaagtatttattgtcaagaaagcaattttc 36390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 40729276 - 40729235
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  40729276 ttgtgtcaataggaaatattcattgtcaaaaaatcaattttc 40729235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 48093279 - 48093238
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  48093279 ttgtgtcaataggaagtattcattgtcaaaaaaacatttttc 48093238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 49792983 - 49793024
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  49792983 ttgtgtcaataggaagtattcatcgtcaaaaaaacaattttc 49793024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 52073548 - 52073507
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| ||||||||||||||||| ||||||||    
T  52073548 ttgtgtcaataggaaatattcattgtcaaaaaaacaattttc 52073507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 9617250 - 9617212
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatt 72  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  9617250 ttgtgtcaataggaagtattcgatgtcaaaaaagcaatt 9617212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 43890418 - 43890468
Alignment:
Q  38 gtcaataggaagtattcattgtcaaaaaagcaattttcccagagaaaaacc 88  Q
    |||||||||||||||||  |||| ||||||||||||||  |||||||||||    
T  43890418 gtcaataggaagtattctatgtccaaaaagcaattttcatagagaaaaacc 43890468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 9618435 - 9618476
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||| |||||||||||||| ||||||||||||| |||||    
T  9618435 ttgtgtcgataggaagtattcaatgtcaaaaaagcatttttc 9618476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 12024542 - 12024501
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||| |||||||||| |||| ||||||||    
T  12024542 ttgtgtcaataggaagttttcattgtcagaaaatcaattttc 12024501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 20902524 - 20902565
Alignment:
Q  37 tgtcaataggaagtattcattgtcaaaaaagcaattttccca 78  Q
    ||||||||||||||||||  ||||| ||||||||||||||||    
T  20902524 tgtcaataggaagtattctatgtcagaaaagcaattttccca 20902565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 21168458 - 21168417
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  21168458 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 21168417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 26592863 - 26592904
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||| |||||||| |||||||| |||||||||||||||||    
T  26592863 ttgtgttaataggaaatattcattatcaaaaaagcaattttc 26592904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 35142881 - 35142840
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||| ||||| |||||||| ||||||||||    
T  35142881 ttgtgtcaataggaagcattcaatgtcaaaatagcaattttc 35142840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 45936647 - 45936606
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  45936647 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 45936606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 49790658 - 49790617
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  49790658 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 49790617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 51029616 - 51029657
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  51029616 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 51029657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 10036867 - 10036826
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10036867 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 10036826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 40469252 - 40469298
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||    
T  40469252 attatttgtgtcaataggaagtattcaatgtcaaaaaagcaattttc 40469298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 34470282 - 34470241
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  34470282 ttgtgtcaataggaagtattcattgtcaaaaaagaaattttc 34470241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 51017283 - 51017320
Alignment:
Q  38 gtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51017283 gtcaataggaagtattcattgtcaaaaaagcaattttc 51017320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 37268112 - 37268150
Alignment:
Q  37 tgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  37268112 tgtcaataggaagtattcattgtcaaaaatgcaattttc 37268150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 11377223 - 11377182
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  11377223 ttgtgtcaatagaaagtattcattgtcgaaaaagcaattttc 11377182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 30194527 - 30194568
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  30194527 ttgtgtcaataggaagtattcatggtcaaaaaaacaattttc 30194568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 37718097 - 37718138
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  37718097 ttgtgtcaataggaagtattcgttgtcgaaaaagcaattttc 37718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 42321760 - 42321719
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  42321760 ttgtgtcaataggaagtattcattgtcaaaaaaataattttc 42321719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 45031554 - 45031513
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  45031554 ttgtgtcaataggaagatttcattgtcaaaaaagcaattttc 45031513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 45266541 - 45266582
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  45266541 ttgtgtcaataggaaatattcaatgtcaaaaaagcaattttc 45266582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 52560323 - 52560282
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  52560323 ttgtgtcaataggaaggtttcattgtcaaaaaagcaattttc 52560282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 21196608 - 21196648
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  21196608 ttgtgtcaataggaagtattctatgtcaaaaaagcaatttt 21196648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 50457470 - 50457430
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  50457470 ttgtgtcaataggaagtattctatgtcaaaaaagcaatttt 50457430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 54922589 - 54922628
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattt 73  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  54922589 ttgtgtcaataggaagtatacaatgtcaaaaaagcaattt 54922628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 54921443 - 54921405
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatt 72  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  54921443 ttgtgtcaatagaaagtattcactgtcaaaaaagcaatt 54921405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 30191706 - 30191665
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  30191706 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 30191665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 34732003 - 34732072
Alignment:
Q  188 aggattttcaaaaaccaattcaagtgtattgatgagttggtggatgaggttaagactttgtcttggtgtt 257  Q
    |||||||| || || |||||||||  |||||  || |||||||||||||||||| | |||||||||||||    
T  34732003 aggatttttaagaatcaattcaagcatattgccgaattggtggatgaggttaaggccttgtcttggtgtt 34732072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 38108813 - 38108772
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| | || |||||||||||||||||||||    
T  38108813 ttgtgtcaataggaactttttattgtcaaaaaagcaattttc 38108772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 46412511 - 46412470
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  46412511 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 46412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 48098164 - 48098205
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  48098164 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 48098205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 44926814 - 44926782
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaa 66  Q
    |||||||||||||||||||||||||||| ||||    
T  44926814 ttgtgtcaataggaagtattcattgtcataaaa 44926782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 45265496 - 45265460
Alignment:
Q  39 tcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||| | |||||||||||||||||||    
T  45265496 tcaataggaagtattgaatgtcaaaaaagcaattttc 45265460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 46415237 - 46415269
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaa 66  Q
    |||||||||||||||||||||||||| ||||||    
T  46415237 ttgtgtcaataggaagtattcattgtaaaaaaa 46415269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 17684531 - 17684490
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17684531 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 17684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 39855467 - 39855426
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39855467 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 39855426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 12792331 - 12792372
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  12792331 ttgtgtcagtaggaagtattcattgtcaaaaaagcaattttc 12792372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 33286249 - 33286285
Alignment:
Q  39 tcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||||||||||||||||||    
T  33286249 tcaataggaagtattcattgtcaaaaaagcaattttc 33286285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 51936620 - 51936658
Alignment:
Q  37 tgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  51936620 tgtcaataggaagtattcaatgtcaaaaaagcaattttc 51936658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 24722559 - 24722644
Alignment:
Q  126 agaaagcttttgggttgatttggcatgccactatatggacgatatggaggtagagaaacgtgaggattttcaaaaaccaattcaag 211  Q
    |||||||||||  |||| |||||||||||||||| |||| ||| |||| | | |||||   ||||||||| |||||||||||||||    
T  24722559 agaaagcttttatgttggtttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaaaaaccaattcaag 24722644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 28861971 - 28861925
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||| ||||||||||||||||||||   |||||||||||||||||||    
T  28861971 attacttgtgtcaataggaagtatttcatgtcaaaaaagcaattttc 28861925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 4911595 - 4911554
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||    
T  4911595 ttgtgtcaatatgaagttttcattgtcaaaaaaacaattttc 4911554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 15356399 - 15356440
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  15356399 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 15356440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 23344502 - 23344543
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||| ||||| || ||||||||||||||||||||||||||    
T  23344502 ttgtgttaatagaaaatattcattgtcaaaaaagcaattttc 23344543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 37777262 - 37777213
Alignment:
Q  27 tcattaattgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 76  Q
    |||||| || |||||||||||| |||||||||| |||| |||||||||||    
T  37777262 tcattacttatgtcaataggaaatattcattgtaaaaacagcaattttcc 37777213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 42463246 - 42463201
Alignment:
Q  30 ttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||| |||||||| ||||| |||||||||| |||||||||||||    
T  42463246 ttaattatgtcaatatgaagttttcattgtcagaaaagcaattttc 42463201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 37505030 - 37505066
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaa 70  Q
    |||||||||||||||||||||| | ||||||||||||    
T  37505030 ttgtgtcaataggaagtattcaatatcaaaaaagcaa 37505066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 46201225 - 46201269
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattt 73  Q
    |||| ||||||||||||||| |||||  |||||||||||||||||    
T  46201225 attacttgtgtcaataggaaatattccatgtcaaaaaagcaattt 46201269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 22965781 - 22965825
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttccca 78  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  22965781 ttgtgtcaataggaagtattcaatgtcaaaaaagcaattttccca 22965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 8214324 - 8214365
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  8214324 ttgtgtcaataggaagtattcaatgtcaaaaaagcaattttc 8214365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 27014674 - 27014719
Alignment:
Q  30 ttaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||    
T  27014674 ttaattgtgttaataggaaatattcattgtcaaaaaagcaattttc 27014719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 12936298 - 12936260
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatt 72  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  12936298 ttgtgtcaataggaagtattcaatgtcaaaaaagcaatt 12936260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 12950453 - 12950415
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatt 72  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  12950453 ttgtgtcaataggaagtattcaatgtcaaaaaagcaatt 12950415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 22964705 - 22964667
Alignment:
Q  37 tgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  22964705 tgtcaataggaagtattcaatgtcaaaaaagcaattttc 22964667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 1690398 - 1690357
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  1690398 ttgtgtcaataggaagtattcattgtcaaaacaacaattttc 1690357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 7483735 - 7483698
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaat 71  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  7483735 ttgtgtcaataggaagtattcattgtcaaaaaaacaat 7483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 7486625 - 7486666
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  7486625 ttgtgtcaatagaaagtattcattgtaaaaaaagcaattttc 7486666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 36351296 - 36351337
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  36351296 ttgtgtcaataggaagtattcattgtcaaaaaaacatttttc 36351337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 39940002 - 39939961
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  39940002 ttgtgtcaataggaagtattcaatgtcaaaaaaacaattttc 39939961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 27408320 - 27408236
Alignment:
Q  127 gaaagcttttgggttgatttggcatgccactatatggacgatatggaggtagagaaacgtgaggattttcaaaaaccaattcaag 211  Q
    ||||||||||  |||| |||||||||||||||| |||| ||| |||| | | |||||   ||||||||| |||||||||||||||    
T  27408320 gaaagcttttatgttggtttggcatgccactatttggatgatttggaaggaaagaaattcgaggatttttaaaaaccaattcaag 27408236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 2401759 - 2401801
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 76  Q
    ||||||||| | |||||||||| ||||||||||||||||||||    
T  2401759 ttgtgtcaacaagaagtattcaatgtcaaaaaagcaattttcc 2401801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 2897992 - 2897954
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatt 72  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  2897992 ttgtgtcaataggaaatattcaatgtcaaaaaagcaatt 2897954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 2899103 - 2899145
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 76  Q
    ||||||||||||||| |||||| |||||||||| |||||||||    
T  2899103 ttgtgtcaataggaaatattcaatgtcaaaaaaacaattttcc 2899145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 7263385 - 7263426
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||| ||||||| |||||||||| |||||||||||||    
T  7263385 ttgtgtcaaaaggaagttttcattgtcagaaaagcaattttc 7263426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 10825347 - 10825306
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||| ||||| |||||||||| |||||||||||||    
T  10825347 ttgtgtcaatatgaagttttcattgtcataaaagcaattttc 10825306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 34394221 - 34394261
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    ||||||||||| ||||| |||||||||| ||||||||||||    
T  34394221 ttgtgtcaatatgaagttttcattgtcagaaaagcaatttt 34394261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 42167191 - 42167150
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  42167191 ttgtgtcaataggaagtattcattgtcaaaaaaccaattttc 42167150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 16583236 - 16583190
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||    
T  16583236 attacttgtgtcaataggaagtattccatgtcaaaaaagcaattttc 16583190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 19243194 - 19243231
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaat 71  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19243194 ttgtgtcgataggaagtattcattgtcaaaaaagcaat 19243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 19316378 - 19316415
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaat 71  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  19316378 ttgtgtcgataggaagtattcattgtcaaaaaagcaat 19316415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 26488536 - 26488573
Alignment:
Q  37 tgtcaataggaagtattcattgtcaaaaaagcaatttt 74  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26488536 tgtcaatatgaagtattcattgtcaaaaaagcaatttt 26488573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 33074867 - 33074908
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  33074867 ttgtgtcaatatgaaatattcattgtcaaaaaagcaattttc 33074908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 2809252 - 2809293
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||| |||||||||| |||||||||| ||||||||    
T  2809252 ttgtgtcaataagaagtattcaatgtcaaaaaaacaattttc 2809293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 8036291 - 8036250
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  ||||| |||||||||||||    
T  8036291 ttgtgtcaataggaagtattctatgtcagaaaagcaattttc 8036250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 40494118 - 40494159
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||| |||||||||| |||| ||||||||    
T  40494118 ttgtgtcaataggaagttttcattgtcagaaaatcaattttc 40494159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 40678297 - 40678338
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  |||||||||| ||||||||    
T  40678297 ttgtgtcaataggaagtattctatgtcaaaaaaacaattttc 40678338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 9904659 - 9904701
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttcc 76  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  9904659 ttgtgtcaatagaaagtattcaatgtcaaaaaagcaattttcc 9904701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 5620794 - 5620835
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||||||||| |||||||||| |||| ||||||||    
T  5620794 ttgtgtcaataggaagttttcattgtcagaaaaacaattttc 5620835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 22868436 - 22868480
Alignment:
Q  29 attaattgtgtcaataggaagtattcattgtcaaaaaagcaattt 73  Q
    |||| ||||||||||||||||| |||  |||||||||||||||||    
T  22868436 attacttgtgtcaataggaagttttctatgtcaaaaaagcaattt 22868480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 130571 - 130612
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  130571 ttgtgtcaataggaagtattctatgtcaaaaaagcaattttc 130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 127245 - 127204
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||| ||||||||||||| |||||| |||||||||||||    
T  127245 ttgtgtcgataggaagtattctttgtcagaaaagcaattttc 127204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 317 - 276
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||| ||||||||||||||||||||| | ||||||    
T  317 ttgtgtcaataagaagtattcattgtcaaaaaaacgattttc 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 2645 - 2604
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    |||||||||||||||||  ||||||||| |||||||||||||    
T  2645 ttgtgtcaataggaagttgtcattgtcagaaaagcaattttc 2604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 5581 - 5622
Alignment:
Q  34 ttgtgtcaataggaagtattcattgtcaaaaaagcaattttc 75  Q
    ||||||||||| |||||||||||||| |||||| ||||||||    
T  5581 ttgtgtcaataagaagtattcattgtaaaaaaaacaattttc 5622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1144 times since January 2019
Visitors: 1526