View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0193_high_29 (Length: 251)

Name: NF0193_high_29
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0193_high_29
NF0193_high_29
[»] chr4 (9 HSPs)
chr4 (1-222)||(3183793-3184017)
chr4 (1-77)||(3186101-3186177)
chr4 (1-77)||(34528124-34528200)
chr4 (1-62)||(44680111-44680172)
chr4 (11-72)||(44795024-44795085)
chr4 (1-77)||(16473717-16473793)
chr4 (1-72)||(28234381-28234452)
chr4 (15-66)||(34530820-34530871)
chr4 (1-66)||(28235598-28235663)
[»] chr6 (3 HSPs)
chr6 (1-72)||(26351133-26351204)
chr6 (1-77)||(26422940-26423016)
chr6 (11-66)||(3501122-3501177)
[»] chr3 (9 HSPs)
chr3 (1-77)||(42166447-42166523)
chr3 (1-66)||(41612339-41612404)
chr3 (6-66)||(2274958-2275018)
chr3 (1-77)||(8475786-8475862)
chr3 (11-77)||(52387744-52387810)
chr3 (1-66)||(17561730-17561795)
chr3 (15-66)||(16861100-16861151)
chr3 (1-66)||(14043935-14044000)
chr3 (1-77)||(4331857-4331933)
[»] chr1 (7 HSPs)
chr1 (1-77)||(97960-98036)
chr1 (1-77)||(22524086-22524162)
chr1 (10-66)||(31783761-31783817)
chr1 (1-66)||(18609932-18609997)
chr1 (15-66)||(21140996-21141047)
chr1 (6-77)||(45977740-45977811)
chr1 (1-38)||(14985337-14985374)
[»] chr7 (5 HSPs)
chr7 (1-72)||(10516984-10517055)
chr7 (1-72)||(45256952-45257023)
chr7 (1-66)||(5541580-5541645)
chr7 (15-66)||(556696-556747)
chr7 (22-66)||(37345161-37345205)
[»] chr2 (2 HSPs)
chr2 (6-77)||(28419367-28419438)
chr2 (11-77)||(40157473-40157539)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-75)||(15659-15733)
[»] chr8 (3 HSPs)
chr8 (1-77)||(45409831-45409907)
chr8 (15-77)||(22550916-22550978)
chr8 (1-77)||(45410956-45411032)
[»] scaffold0504 (1 HSPs)
scaffold0504 (6-74)||(12345-12413)
[»] chr5 (1 HSPs)
chr5 (1-77)||(42912915-42912991)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3184017 - 3183793
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt-------gattaaacaaaaattc 93  Q
    |||| |||| ||||||||||||||| |||||||||||| || ||||||||| |||||||||||||| ||||| ||||       |  ||| ||| ||||     
T  3184017 ctgccgccggtttactaaaacttcggcagttaactgtcgaaggacatttagataaaatactcgtgtggcacagccttatcaaatgtgtaagcaacaatt- 3183919  T
Q  94 tatgtaaaccacaaagcataaccaaaacgacaaagaagggaccaaaacgacacttcaagtctgaaacttcacgcatagtgcaatttcctgcaattctctt 193  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  3183918 tatgtaaaccacgaagcataagcaaaacgacaaagaagggaccaaaacgacacttcaagtctgaaacttcacgcatagtgcaatttcct---attctctt 3183822  T
Q  194 cccaaattttccatttctctccaattccc 222  Q
    |||||||||||||||||||||||||||||    
T  3183821 cccaaattttccatttctctccaattccc 3183793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3186101 - 3186177
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| ||||||||||||||  |||||||||||| || |||||||||||||||||||||||| ||||| ||||    
T  3186101 ctgccgccggtttactaaaacttctgcagttaactgtcgaaggacatttaggtaaaatactcgtgtggcacagcctt 3186177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34528200 - 34528124
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| |||||||||||||||||||||||||||| || | |||||  ||||| ||||||||||||||| ||||    
T  34528200 ctgccgccggtttactaaaacttcgacagttaactgtcgaagggcattttcgtaaagtactcgtgtagcacagcctt 34528124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44680111 - 44680172
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactc 62  Q
    |||| |||| ||||||||||||||| |||||||||||| || |||||||||||||| |||||    
T  44680111 ctgccgccggtttactaaaacttcggcagttaactgtcgaaggacatttaggtaaattactc 44680172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 44795085 - 44795024
Alignment:
Q  11 tttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcaca 72  Q
    ||||||||||||||| |||||||||| | |||| |||||  ||||| |||||||||||||||    
T  44795085 tttactaaaacttcggcagttaactgccgaatggcattttcgtaaagtactcgtgtagcaca 44795024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16473717 - 16473793
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| ||||||||||||||| |||||||||| | || | |||||  ||||| ||||||||| ||||||||||    
T  16473717 ctgccgccggtttactaaaacttcggcagttaactgccgaagggcattttcgtaaagtactcgtgtggcacaacctt 16473793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28234452 - 28234381
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcaca 72  Q
    |||| |||| |||||||||||||||||| ||||||||| || | |||||  ||||| ||||||||| |||||    
T  28234452 ctgccgccggtttactaaaacttcgacaattaactgtcgaagggcatttttgtaaagtactcgtgtggcaca 28234381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 34530820 - 34530871
Alignment:
Q  15 ctaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||||||||||||||||||||| | || |||||||||||||| || ||||||    
T  34530820 ctaaaacttcgacagttaactgccgaaggacatttaggtaaattattcgtgt 34530871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28235598 - 28235663
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||| |||| ||||||||||||||| |||||||||| | || | |||||  |||||||||||||||    
T  28235598 ctgccgccggtttactaaaacttcggcagttaactgccgaagggcattttcgtaaaatactcgtgt 28235663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26351133 - 26351204
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcaca 72  Q
    |||| |||| |||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||| |||||    
T  26351133 ctgccgccggtttactaaaacttcgacagttaactgtcgaatgacattttcgtaaagtactcgtgtggcaca 26351204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26423016 - 26422940
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| |||||||||||||||||||| ||||  | ||||||||||   |||| ||||||||||||||||||||    
T  26423016 ctgccgccggtttactaaaacttcgacagtaaactaccgaatgacattttaataaagtactcgtgtagcacaacctt 26422940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 3501177 - 3501122
Alignment:
Q  11 tttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||||||||||||||||||||||||| | || | |||||| |||||||||||||||    
T  3501177 tttactaaaacttcgacagttaactgccgaagggcatttacgtaaaatactcgtgt 3501122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42166447 - 42166523
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| ||||||||||||||| |||||||||| | ||||||||||  ||||| ||||||||| ||||||||||    
T  42166447 ctgccgccggtttactaaaacttcggcagttaactgccgaatgacatttttgtaaagtactcgtgtggcacaacctt 42166523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41612404 - 41612339
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||| |||||||| |||||||||||||||||||||| |||  |||||||| ||||| |||||||||    
T  41612404 ctgccgccgattttctaaaacttcgacagttaactgccaatagacatttatgtaaattactcgtgt 41612339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 2274958 - 2275018
Alignment:
Q  6 gccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||| ||||||||||||| | |||||||||| | ||||||||||||||||| |||||||||    
T  2274958 gccggtttactaaaactttggcagttaactgcccaatgacatttaggtaaattactcgtgt 2275018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8475862 - 8475786
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| ||||||||||||||| |||||||||| | || |||||||  ||||| ||||||||| ||||||||||    
T  8475862 ctgccgccggtttactaaaacttcggcagttaactgccgaaggacattttcgtaaagtactcgtgtggcacaacctt 8475786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 52387810 - 52387744
Alignment:
Q  11 tttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||||||||||||||||||||||||| | || | |||||  ||||||||||| ||| ||||||||||    
T  52387810 tttactaaaacttcgacagttaactgccgaagggcattttcgtaaaatactcatgtggcacaacctt 52387744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17561795 - 17561730
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||| |||| ||| |||||| |||| ||||||||||||||  |||||||||||||| |||||||||    
T  17561795 ctgcagccggttttctaaaatttcggcagttaactgtcaagggacatttaggtaaattactcgtgt 17561730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 16861151 - 16861100
Alignment:
Q  15 ctaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||||||||||||||||||||||| |  | |||||||||||| |||||||||    
T  16861151 ctaaaacttcgacagttaactgtcgaggggcatttaggtaaattactcgtgt 16861100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14043935 - 14044000
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||| |||||||| |||||||||||||||||||||| | || |  |||| |||||| |||||||||    
T  14043935 ctgcagccgattttctaaaacttcgacagttaactgccgaagggtatttgggtaaattactcgtgt 14044000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4331857 - 4331933
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| ||||||||||||||| |||||||||| | || || ||||  ||||| ||||||||| ||||| ||||    
T  4331857 ctgccgccggtttactaaaacttcggcagttaactgccgaaggatattttcgtaaagtactcgtgtggcacagcctt 4331933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 97960 - 98036
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||||||||||||||||||| |||||||||||  ||   |||||||||||||||||||||| ||||| ||||    
T  97960 ctgccgccgatttactaaaacttcggcagttaactgttgaagagcatttaggtaaaatactcgtgtggcacagcctt 98036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22524162 - 22524086
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| ||||||||||||||| || ||||||||| |  | |||||||||||| ||||||||| ||||||||||    
T  22524162 ctgccgccggtttactaaaacttcggcacttaactgtcgaggggcatttaggtaaattactcgtgtggcacaacctt 22524086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 31783761 - 31783817
Alignment:
Q  10 atttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    ||||||||||||||||||||||||||||| || |||||||  || ||||||||||||    
T  31783761 atttactaaaacttcgacagttaactgtcgaaggacattttcgttaaatactcgtgt 31783817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18609932 - 18609997
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||| |||| ||||||||||||||| |||||||||| |||| | || |||||||||||| ||||||    
T  18609932 ctgccgccggtttactaaaacttcggcagttaactgccaaagggcaattaggtaaaatattcgtgt 18609997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 21141047 - 21140996
Alignment:
Q  15 ctaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    ||||||||||| ||||||| |||| || |||||||||||||| |||||||||    
T  21141047 ctaaaacttcggcagttaattgtcgaaggacatttaggtaaattactcgtgt 21140996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 45977740 - 45977811
Alignment:
Q  6 gccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| ||||||||||||||| |||||||||| | ||||||||||  ||||| ||||||| | ||||| ||||    
T  45977740 gccggtttactaaaacttcggcagttaactgccgaatgacattttcgtaaagtactcgtatggcacagcctt 45977811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14985374 - 14985337
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtc 38  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  14985374 ctgccgccgatttactaaaacttcggcagttaactgtc 14985337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10517055 - 10516984
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcaca 72  Q
    ||||||||| |||||||||||||||||||||||||| ||||  ||||||  ||||| ||||||||| |||||    
T  10517055 ctgctgccggtttactaaaacttcgacagttaactgccaaagaacattttcgtaaagtactcgtgtggcaca 10516984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 45257023 - 45256952
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcaca 72  Q
    |||| |||| |||||||||||||||||| ||||||| | || |||||||||||||| ||||| ||| |||||    
T  45257023 ctgccgccggtttactaaaacttcgacaattaactgccgaaggacatttaggtaaattactcatgtggcaca 45256952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5541580 - 5541645
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    |||| |||| ||| ||||||||| |||||||||||| |||| | |||||||||||| |||||||||    
T  5541580 ctgccgccggttttctaaaactttgacagttaactgccaaagggcatttaggtaaattactcgtgt 5541645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 556696 - 556747
Alignment:
Q  15 ctaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    ||||||||| ||||||||||||||||  ||||||||| |||| |||||||||    
T  556696 ctaaaactttgacagttaactgtcaagagacatttagataaattactcgtgt 556747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 37345161 - 37345205
Alignment:
Q  22 ttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgt 66  Q
    ||||||||||||||| | || |||||||||||||| |||||||||    
T  37345161 ttcgacagttaactgccgaaggacatttaggtaaattactcgtgt 37345205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 28419438 - 28419367
Alignment:
Q  6 gccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| ||||||||||||||| |||||||||| | || | |||||||||||||||||||||| ||||| ||||    
T  28419438 gccggtttactaaaacttcggcagttaactgccgaagggcatttaggtaaaatactcgtgtggcacagcctt 28419367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 40157473 - 40157539
Alignment:
Q  11 tttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||||||||||||||||||||||||||  || | |||||  ||||| ||| ||||| ||||||||||    
T  40157473 tttactaaaacttcgacagttaactgttgaagggcattttcgtaaagtacacgtgtcgcacaacctt 40157539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 15659 - 15733
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacc 75  Q
    |||| |||| |||||||||||||||||||||||||| | || |||||||  ||||| ||||||||| ||||||||    
T  15659 ctgccgccggtttactaaaacttcgacagttaactgccgaaggacattttcgtaaagtactcgtgtggcacaacc 15733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45409907 - 45409831
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||||||||||||||||||| |||||||||| | || | |||||  ||||| ||||||||| ||||| ||||    
T  45409907 ctgccgccgatttactaaaacttcggcagttaactgccgaagggcattttcgtaaagtactcgtgtggcacagcctt 45409831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 22550916 - 22550978
Alignment:
Q  15 ctaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    ||||||||||| |||||||||| | || | |||||||||||| ||||||||| ||||| ||||    
T  22550916 ctaaaacttcggcagttaactgccgaagggcatttaggtaaattactcgtgtggcacagcctt 22550978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45410956 - 45411032
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| |||||||||||||| |||||||||||   || |||||||  ||||| ||||| ||| ||||||||||    
T  45410956 ctgccgccggtttactaaaacttccacagttaactgctgaaggacattttcgtaaagtactcatgtggcacaacctt 45411032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 12413 - 12345
Alignment:
Q  6 gccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaac 74  Q
    |||| |||||||||| ||||||||||||||| | || | |||||  ||||| ||||||||| |||||||    
T  12413 gccggtttactaaaatttcgacagttaactgccgaagggcatttttgtaaagtactcgtgtggcacaac 12345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42912915 - 42912991
Alignment:
Q  1 ctgctgccgatttactaaaacttcgacagttaactgtcaaatgacatttaggtaaaatactcgtgtagcacaacctt 77  Q
    |||| |||| |||||||||||||||||| ||||||  | || | ||||||  |||||||||||||| ||||| ||||    
T  42912915 ctgccgccggtttactaaaacttcgacaattaactaccgaagggcatttaaataaaatactcgtgtggcacagcctt 42912991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 16873 times since January 2019
Visitors: 1190