View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_high_3 (Length: 479)
Name: NF0193_high_3
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 322 - 465
Target Start/End: Complemental strand, 30366037 - 30365895
Alignment:
| Q |
322 |
aagcagctaacagagccataaattgtgatttggttgagtgaaatcgaacagagcaacaacaacagtgaacatgagaacaaaggagttgagagagaaaaga |
421 |
Q |
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| T |
30366037 |
aagcagctaacagagcaa-aaatcgtgatttggttgagtgaaatcgaacagagcaacaacaacagtgaacatgagaacaaaggagtggagagagaaaaga |
30365939 |
T |
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| Q |
422 |
atactaccgctttgaagaatcctcaagagcaacaacgggcaaca |
465 |
Q |
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| T |
30365938 |
atactaccgttttgaagaatcctcaagagcaacagcgagcaaca |
30365895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 30366138 - 30366106
Alignment:
| Q |
25 |
catcatacgagaccacaaaccacaaaattcctt |
57 |
Q |
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| T |
30366138 |
catcatacgagaccacaaaccacaaaattcctt |
30366106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 21657969 - 21657851
Alignment:
| Q |
66 |
ttagcaattgatatgataatccatttggccttaacttgatcttcatttctagtttcattttcaccgacaaatggtttttgaaaatctatatactctttaa |
165 |
Q |
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|||| ||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |
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| T |
21657969 |
ttagtaattgatatgagaatccatttgaccttgacttgatcttcatctctagtttcattttcatcgacatatgatttttgaaaatctatatactctttaa |
21657870 |
T |
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| Q |
166 |
ttagcttgcaccttttttc |
184 |
Q |
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| T |
21657869 |
ttagcttgcatcttttttc |
21657851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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