View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_high_33 (Length: 240)
Name: NF0193_high_33
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 1758226 - 1758082
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1758226 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
1758127 |
T |
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| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
1758126 |
tgatggtgaacggcgtttgacagagtttttgtgagagtgatgatg |
1758082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 29569722 - 29569867
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |
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| T |
29569722 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttggtgagcagatgatga |
29569821 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgt |
146 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569822 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgt |
29569867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 27918728 - 27918584
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||| ||||| |
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| T |
27918728 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttggtgagcagaagatga |
27918629 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27918628 |
tgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatg |
27918584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 29425374 - 29425232
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29425374 |
ggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatga |
29425275 |
T |
|
| Q |
101 |
tgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
140 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
29425274 |
tgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 29568391 - 29568535
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
29568391 |
ggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaagatga |
29568490 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
|||||||||| ||||||||| |||||| ||||||||||||||||| |
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| T |
29568491 |
tgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatg |
29568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 29168333 - 29168189
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||| |
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| T |
29168333 |
ggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttggtgagcagaagatga |
29168234 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29168233 |
tgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatg |
29168189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27521357 - 27521501
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
27521357 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgggcagatgatga |
27521456 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521457 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
27521501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 27462078 - 27461934
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
27462078 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatga |
27461979 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27461978 |
tgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatg |
27461934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 27482217 - 27482073
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
27482217 |
ggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatga |
27482118 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27482117 |
tgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatg |
27482073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 18986178 - 18986034
Alignment:
| Q |
1 |
ggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatga |
100 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
18986178 |
ggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttggtgagcagatgatga |
18986079 |
T |
|
| Q |
101 |
tgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||| ||||||||| |
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|
| T |
18986078 |
tgatggtgaacagagtttgacagtgttgttgtgagggtgatgatg |
18986034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 25518560 - 25518418
Alignment:
| Q |
3 |
agactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatg |
102 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
25518560 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaagatgatg |
25518461 |
T |
|
| Q |
103 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518460 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
25518418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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