View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_high_5 (Length: 381)
Name: NF0193_high_5
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9842920 - 9843125
Alignment:
| Q |
1 |
tgaacttgtagttttatttagtgatccatcgattcctccaaaaatggatcctagccttagaggtcgtgaacaaaaatattgctaatataataagtccact |
100 |
Q |
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| T |
9842920 |
tgaacttgcagttttatttagtgatccatcgattcctccaaaaatggatcctagccttagaggttgtgaacaaaaatattgataatataataagtccact |
9843019 |
T |
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| Q |
101 |
attgcattcattaaatatatgcttgatattacatgaatgatggattgatccattcaaatggtaaaacaagaggaaaatttatcaaacaattttacacctg |
200 |
Q |
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| T |
9843020 |
attgcattcattaaatatatgcttgatattacatgaatgatggattgatgcattcaaatggtaaaacaagaggaaaatttatcaaacaattttacacttg |
9843119 |
T |
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| Q |
201 |
tgactt |
206 |
Q |
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|||||| |
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| T |
9843120 |
tgactt |
9843125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 85 - 283
Target Start/End: Complemental strand, 9825907 - 9825709
Alignment:
| Q |
85 |
atataataagtccactattgcattcattaaatatatgcttgatattacatgaatgatggattgatccattcaaatggtaaaacaagaggaaaatttatca |
184 |
Q |
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| T |
9825907 |
atataataagcccactattgcattcattaaatatatgcttgatattacatgaatgatggattgatgcattcaaatggtaaaacaagagaaaaatttatca |
9825808 |
T |
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| Q |
185 |
aacaattttacacctgtgacttaagtcttgttgaacttgcagtgcatcgtattgcacactgtttctcaaattactgcagaaatttagttcggcttggat |
283 |
Q |
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| T |
9825807 |
aacaattttacacttgtgacttgagtctagttgaacttgcagtgcatcgtattgcacactgtttctcaaattactgcagaaatttatttcagcttggat |
9825709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 208 - 361
Target Start/End: Original strand, 9849482 - 9849635
Alignment:
| Q |
208 |
agtcttgttgaacttgcagtgcatcgtattgcacactgtttctcaaattactgcagaaatttagttcggcttggatgatgaaaatgaaatattactttgt |
307 |
Q |
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| T |
9849482 |
agtcttgttgaacttgcagtgcatcgtattgcacactgtttctcaaattactgcagaaatttagttcggcttggatgatgaaaatgaaatattactttgt |
9849581 |
T |
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| Q |
308 |
aagcaactacaatctcaattttcttaccagtgagaaaagtgtttctgatgatgt |
361 |
Q |
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| T |
9849582 |
aagcaactacaatctcaattttcttaccagtgagaaaagtgtttctgattatgt |
9849635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 10560111 - 10560018
Alignment:
| Q |
70 |
acaaaaatattgctaatataataagtccactattgcattcattaa--atatatgcttgatattacatgaatgatggattgatccattcaaatgg |
161 |
Q |
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|||||| ||||| |||||||||||||||| |||||||||||| || |||||| |||||| |||||||||||||||||| || |||| |||||| |
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| T |
10560111 |
acaaaagtattgataatataataagtccagtattgcattcatcaaatatatatacttgatgttacatgaatgatggattaatacattaaaatgg |
10560018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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