View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_1 (Length: 726)
Name: NF0193_low_1
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 98 - 575
Target Start/End: Complemental strand, 22807590 - 22807114
Alignment:
| Q |
98 |
gatgtggataacatttttacttttgtagtgtgataagttgacttgatactagattgtgcatcatttgtgatagaacatgaaaccttgtgagtttttgagc |
197 |
Q |
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| T |
22807590 |
gatgtggataacatttttacttttgtagtgtgataagttgacttgatactagattgtgcatcatttgtgataga-catgaaaccttgtgagtttttgagc |
22807492 |
T |
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| Q |
198 |
ttccaacatttgttgtttcttgtgtgaattcactcatactgttagttacttccaggatttgtcttgactcttgaagcacttgttcacatgcatgtacaga |
297 |
Q |
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| T |
22807491 |
ttccaacatttgttgtttcttgtgtgaattcactcatactgttagttacttccagggtttgccttgactcttgaaacacttgttcacatgcatgtacgga |
22807392 |
T |
|
| Q |
298 |
aaggatctaggccatttttcttttataacctactttcagcaaaataagcttaccttgatataattattcctttgttaaacccctttgagatatttatccc |
397 |
Q |
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| T |
22807391 |
aatgatatacgccatctttctttcataacctacttttagccaaataagcctaccctgatattattattcctttgttaagcccctttaagctatttatccc |
22807292 |
T |
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| Q |
398 |
attctttgtttattacctcattacatgccaattaagcctttgttttatccattctttttatgtgccaatcttaggggatgaaggtgcttgaattttaaat |
497 |
Q |
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| T |
22807291 |
attctttgtatattacctaattacaagccaattaagcctttgttttatccattctttttatgtcccaatcttagtggatgaaggagcttgaattctaaat |
22807192 |
T |
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| Q |
498 |
tttgaataagtgtgggggtgcttattatggttctaattttgatctgataagggaaagggaaatattatgttggtttgg |
575 |
Q |
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| T |
22807191 |
tttgaataagtgtggaggttctcattatggttctaatttttatctgataggggaaagggaaatattatgttcgtttgg |
22807114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 657 - 723
Target Start/End: Complemental strand, 22807041 - 22806975
Alignment:
| Q |
657 |
tgtgttgaaagttatattgtgggcaaattctgatgtgaaggtgtgtgaaaaagctatcatatgatat |
723 |
Q |
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|||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |
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| T |
22807041 |
tgtgctgaaagttgtattgtgggcaatttctgatgtgaaggcgtgtgaaaaagctatcataggatat |
22806975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 124 - 381
Target Start/End: Complemental strand, 33320509 - 33320255
Alignment:
| Q |
124 |
agtgtgataagttgacttgatactagattgtgcatcatttgtgatagaacatgaaaccttgtgagtttttgagcttccaacatttg--ttgtttcttgtg |
221 |
Q |
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| T |
33320509 |
agtgtgataagttgacttgatactagatagtgcatcaattgtgatagaacattaa-cctt---aggttatg-gcctccaacatctcgattgtttatggtg |
33320415 |
T |
|
| Q |
222 |
tgaattcactcatactgttagttacttccaggatttgtcttgactcttgaagcacttgttcacatgcatgtacagaaaggatctaggccatttttctttt |
321 |
Q |
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|| |||| |||||| |||||||||||| | | ||| ||| | |||| |||||||| |||||||||||||||| ||| ||| |||||||| ||||||| |
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| T |
33320414 |
tggattctctcatattgttagttactttcgaggttttccttaagtcttaaagcactttttcacatgcatgtacaaaaatgatttaggccatctttctttc |
33320315 |
T |
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| Q |
322 |
ataacctactttcagcaaaataagcttaccttgatataattattcctttgttaaacccct |
381 |
Q |
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| T |
33320314 |
ataacctacttttagccaaatcagcctaccttgatgtaattatcccttagttaagcccct |
33320255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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