View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0193_low_11 (Length: 347)
Name: NF0193_low_11
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 115 - 337
Target Start/End: Original strand, 3615650 - 3615872
Alignment:
| Q |
115 |
tccttgtataggggatttttagacagcagctggggtatattttgggcagttttctcggctgttaatgctggtgtttgcagcttccgctgtcatgcccggc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3615650 |
tccttgtataggggatttttagacagcagctggggtatattttgggcagttttctcggctgttaatgctggtgtgtgcagcttccgctgtcatgcccggc |
3615749 |
T |
|
| Q |
215 |
aaaaccaacagtcgttggtttttatctctgtttttgcgcctttgtcgcttgctttctggtatattggcttttgcttttgtaggatcatctgttgttttta |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3615750 |
aaaaccagcagtcgttggtttttatctctgtttttgcgcctttgtcacttgctttctggtatattggcttttgcttttgtaggatcatctgttgttttta |
3615849 |
T |
|
| Q |
315 |
ttttcttgcctttgtcgtctgtg |
337 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
3615850 |
tttccttgcctttgtcgtctgtg |
3615872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 3615561 - 3615654
Alignment:
| Q |
1 |
ttaagactttgtcttggtgttgggcttaaataggtctcgaattgcatcttgcctattctatgagtggtgttggaatccaagggattgcttcctt |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3615561 |
ttaagactttgtcttggtgttgggcttaaataggtctcgaattgcatcttacctattctatgagtggtgtgggaatccaagggattgcttcctt |
3615654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 34732060 - 34732160
Alignment:
| Q |
9 |
ttgtcttggtgttgggc-ttaaataggtctcgaattgcatcttgcctattctatgagtggtgttggaatccaagggattgcttccttaggaggcgttgat |
107 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||| |||||||||||| ||| |||||||||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
34732060 |
ttgtcttggtgttgggcgttaaataggctccgtatttcatcttgcctatactacgagtggtgttggaaaccaagggagtgcttacttaggaggcgttgat |
34732159 |
T |
|
| Q |
108 |
t |
108 |
Q |
| |
|
| |
|
|
| T |
34732160 |
t |
34732160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 47820326 - 47820354
Alignment:
| Q |
56 |
ttctatgagtggtgttggaatccaaggga |
84 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
47820326 |
ttctatgagtggtgttggaatccaaggga |
47820354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 52005204 - 52005161
Alignment:
| Q |
41 |
attgcatcttgcctattctatgagtggtgttggaatccaaggga |
84 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52005204 |
attgcgtcttgcctattctatgagtggtgttggaatccacggga |
52005161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1163 times since January 2019
Visitors: 1527