View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0193_low_12 (Length: 323)

Name: NF0193_low_12
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0193_low_12
NF0193_low_12
[»] chr8 (1 HSPs)
chr8 (91-323)||(23131572-23131804)
[»] chr1 (1 HSPs)
chr1 (91-323)||(20285777-20286009)
[»] chr3 (2 HSPs)
chr3 (91-323)||(11898076-11898308)
chr3 (91-318)||(26431690-26431917)
[»] chr2 (1 HSPs)
chr2 (91-323)||(14652667-14652899)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 91 - 323
Target Start/End: Complemental strand, 23131804 - 23131572
Alignment:
Q  91 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccctttggttccataattggagcccccatggactg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  23131804 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg 23131705  T
Q  191 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23131704 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta 23131605  T
Q  291 atctgcctccagcaattgcagattacattaata 323  Q
    |||||||||||||||||||||||||||||||||    
T  23131604 atctgcctccagcaattgcagattacattaata 23131572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 91 - 323
Target Start/End: Original strand, 20285777 - 20286009
Alignment:
Q  91 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccctttggttccataattggagcccccatggactg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  20285777 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg 20285876  T
Q  191 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285877 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta 20285976  T
Q  291 atctgcctccagcaattgcagattacattaata 323  Q
    |||||||||||||||||||| ||||||||||||    
T  20285977 atctgcctccagcaattgcatattacattaata 20286009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 91 - 323
Target Start/End: Original strand, 11898076 - 11898308
Alignment:
Q  91 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccctttggttccataattggagcccccatggactg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  11898076 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg 11898175  T
Q  191 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11898176 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacatatcggtcaacacactcatgctctctacacta 11898275  T
Q  291 atctgcctccagcaattgcagattacattaata 323  Q
    |||||||||||||||||||| ||||||||||||    
T  11898276 atctgcctccagcaattgcatattacattaata 11898308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 91 - 318
Target Start/End: Complemental strand, 26431917 - 26431690
Alignment:
Q  91 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccctttggttccataattggagcccccatggactg 190  Q
    ||||||||||||||||||| | ||  ||||||| ||||||||||| ||||| || | | |||||||| ||||||| |||||||||||||| || ||||||    
T  26431917 catcatcaaagcaaaaaatattctttgtaatggatatctatggcgtgctggctcgggttcctcctccttttggtttcataattggagcccacacggactg 26431818  T
Q  191 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta 290  Q
    ||||| ||    ||||||||||||||||| || |||||||| ||||| |||||||| ||| || |  ||||||| |||||| | || |||||||||||||    
T  26431817 attggttccttggttcccatcattgacatacatgatattcacctcactgttaaagaggttctctcctataacggacaacactcacaggctctctacacta 26431718  T
Q  291 atctgcctccagcaattgcagattacat 318  Q
    ||||||| ||  ||||||||||||||||    
T  26431717 atctgcccccgacaattgcagattacat 26431690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 91 - 323
Target Start/End: Complemental strand, 14652899 - 14652667
Alignment:
Q  91 catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccctttggttccataattggagcccccatggactg 190  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| || ||||||  ||||||| ||||||||||||||||| ||||||    
T  14652899 catcatcaaagcaaaaaatattctccgtaatggttatctatggcgtgctggctcaggtaactcctctttttggtttcataattggagcccccacggactg 14652800  T
Q  191 attggctcacacgttcccatcattgacatccacgatattcaactcacggttaaagatgttttcacacataacggtcaacacactcatgctctctacacta 290  Q
    ||||| ||||  ||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  14652799 attggttcactggttcccatcattgacatacatgatattcaactcacagttaaagatgttttcacccataacggccaacacactcatgctctctacacta 14652700  T
Q  291 atctgcctccagcaattgcagattacattaata 323  Q
    |||||||||||||||||||||||||||| ||||    
T  14652699 atctgcctccagcaattgcagattacatcaata 14652667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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