View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_13 (Length: 319)
Name: NF0193_low_13
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 6222229 - 6222518
Alignment:
| Q |
14 |
gagattctctggtaacttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataacactcttcaccattt |
113 |
Q |
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| T |
6222229 |
gagattctctggtaacttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataacactcttcaccattt |
6222328 |
T |
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| Q |
114 |
tcgaaagtttgatcatgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgtttatgagagaatgggagccgtaag |
213 |
Q |
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| T |
6222329 |
tcgaaagtttgatcatgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgtttatgagaaaatgggagccgtaag |
6222428 |
T |
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| Q |
214 |
tatcagaggttttgacggcggtgagagacggaaagataccggaattctgtgggtgtgtggctaagttgacggtggcgaaggtgccactac |
303 |
Q |
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| T |
6222429 |
tatcagaggttttgactgcggtgagagacggaaagataccggaattctgtgggtgtgtggctaagttgacggtggcgaaggtgccactac |
6222518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 6233020 - 6233182
Alignment:
| Q |
29 |
cttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataacactcttcaccattttcgaaagtttgatca |
128 |
Q |
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|||||||||||| |||| |||||||||||||||||| || || ||| ||||||||||||||||| ||| |||||||| | ||||| | ||||| || |
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| T |
6233020 |
cttaccaccatgtttctcgagttgatcggagagagttccaccgctagcgtattctagaaaaatattgtaatactcttcatcgttttcaacagttttgtct |
6233119 |
T |
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| Q |
129 |
tgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgttt |
191 |
Q |
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|| |||||| |||| |||| |||||||||||||||||||| || |||||||||||||||||| |
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| T |
6233120 |
tggccaaaacacttgataacatgtggggatgatcctaaacgatcgagtatttgtttctcgttt |
6233182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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