View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_14 (Length: 319)
Name: NF0193_low_14
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 35633165 - 35633446
Alignment:
| Q |
30 |
aaaagttgttgaatatttcacatcaataatatggttnnnnnnngttaaattttaaatgggtaaatgcaactagttaaataggtttgtgtttaaaaaataa |
129 |
Q |
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| T |
35633165 |
aaaagttgttggatatttcacatcaataacatggttaaaaaaagttaaattttaaatgggtaaatgcaactagttaaataggtttgtgtttaaaagttaa |
35633264 |
T |
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| Q |
130 |
gggataacgatattaaccgatacaatccacacttatgatggtgtttcnnnnnnnagggtgcttagggtgtttctctttacaatcattg-nnnnnnnnatg |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||| |
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| T |
35633265 |
gggataacgatattaaccgatacaatccacacttatgatggtgtttctttttttatggtgcttagggtgtttctctttacaaccattgtttttttttatg |
35633364 |
T |
|
| Q |
229 |
aatcagatatcattgacgcacaatgattcttcgagttgaataagactacatttcaacagagtctatcaatatgtagtattat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
35633365 |
aatcagatatcattgacgcacaatgattcttcgagttgaataagactaaatttcgacagagtctatcaatatgtagtattat |
35633446 |
T |
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