View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0193_low_15 (Length: 318)
Name: NF0193_low_15
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0193_low_15
Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 30 - 309
Target Start/End: Original strand, 35633165 - 35633446
Alignment:
Q
30
aaaagttgttgaatatttcacatcaataatatggttnnnnnnngttaaattttaaatgggtaaatgcaactagttaaataggtttgtgtttaaaaaataa
129
Q
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
T
35633165
aaaagttgttggatatttcacatcaataacatggttaaaaaaagttaaattttaaatgggtaaatgcaactagttaaataggtttgtgtttaaaagttaa
35633264
T
Q
130
gggataacgatattaaccgatacaatccacacttatgatggtgtttcnnnnnnnagggtgcttagggtgtttctctttacaatcattg--nnnnnnnatg
227
Q
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||| |||
T
35633265
gggataacgatattaaccgatacaatccacacttatgatggtgtttctttttttatggtgcttagggtgtttctctttacaaccattgtttttttttatg
35633364
T
Q
228
aatcagatatcattgacgcacaatgattcttcgagttgaataagactacatttcaacagagtctatcaatatgtagtattat
309
Q
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
T
35633365
aatcagatatcattgacgcacaatgattcttcgagttgaataagactaaatttcgacagagtctatcaatatgtagtattat
35633446
T
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