View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_16 (Length: 317)
Name: NF0193_low_16
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 6149112 - 6148916
Alignment:
| Q |
17 |
taatactttaacaaaatttattttaattaagggtttgcctaacttaactcgtacctttgttcttatctcgttctacttggaaagaaaatatgtaaaaagg |
116 |
Q |
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| T |
6149112 |
taatactttaacaaaatttattttaattaagggtttgtctaacttaactcgtacctttgttcttatctcgttctacttagaaagaaaaaatgtaaaaagg |
6149013 |
T |
|
| Q |
117 |
aaatttaaatagacaaaatatttttagggctttaacttcgcaccccacatacacccttctgttttcctctaagtatattatgttcaaggtttgtttg |
213 |
Q |
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| T |
6149012 |
aaatttaaatagacaaaatatttttagggctttaacttcacaccccacatacacccttctgttttcctctaagtatattatgttcaaggtttgtttg |
6148916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 289
Target Start/End: Complemental strand, 6148870 - 6148840
Alignment:
| Q |
259 |
gacaaaagtattcacttctacatacacatat |
289 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6148870 |
gacaaaagtattcacttctacatacacatat |
6148840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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