View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0193_low_17 (Length: 312)
Name: NF0193_low_17
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_17 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 69 - 312
Target Start/End: Original strand, 6222214 - 6222457
Alignment:
| Q |
69 |
tgtgtaacgccgaatgagattctctggtaacttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataa |
168 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222214 |
tgtgtaacgccgaacgagattctctggtaacttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataa |
6222313 |
T |
|
| Q |
169 |
cactcttcaccattttcgaaagtttgatcatgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgtttatgagag |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6222314 |
cactcttcaccattttcgaaagtttgatcatgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgtttatgagaa |
6222413 |
T |
|
| Q |
269 |
aatgggagccgtaagtatcagaggttttgacggcggtgagagac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6222414 |
aatgggagccgtaagtatcagaggttttgactgcggtgagagac |
6222457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 99 - 261
Target Start/End: Original strand, 6233020 - 6233182
Alignment:
| Q |
99 |
cttaccaccatgattcttgagttgatcggagagagtaccgccagcagcatattctagaaaaatattataacactcttcaccattttcgaaagtttgatca |
198 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| || || ||| ||||||||||||||||| ||| |||||||| | ||||| | ||||| || |
|
|
| T |
6233020 |
cttaccaccatgtttctcgagttgatcggagagagttccaccgctagcgtattctagaaaaatattgtaatactcttcatcgttttcaacagttttgtct |
6233119 |
T |
|
| Q |
199 |
tgaccaaaatacttaataatatgtggggatgatcctaaactttcaagtatttgtttctcgttt |
261 |
Q |
| |
|
|| |||||| |||| |||| |||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
6233120 |
tggccaaaacacttgataacatgtggggatgatcctaaacgatcgagtatttgtttctcgttt |
6233182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 37223 times since January 2019
Visitors: 1231