View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0193_low_2 (Length: 590)
Name: NF0193_low_2
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_2 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 30 - 590
Target Start/End: Complemental strand, 29357366 - 29356806
Alignment:
| Q |
30 |
gttcctgctacacgtgtgctgacatgagtcacgtttgcaggcataagctttgcaagaccgaagtcggaaatcttgggtgtcaggtctttgtcaaggagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29357366 |
gttcctgctacacgtgtgctgacatgagtcgcgtttgcaggcataagctttgcaagaccaaagtcggaaatcttgggtgtaaggtctttgtcaaggagaa |
29357267 |
T |
|
| Q |
130 |
tattgcttgcttttatatccctatgaatgataggaggcctaacttcttcatgtagaaaggcaagcccgcgtgcaatgccaacacatattctacatcgcgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357266 |
tattgcttgcttttatatccctatgaatgataggaggcctaacttcttcgtgtagaaaggcaagcccgcgtgcaatgccaacacatattctacatcgcgt |
29357167 |
T |
|
| Q |
230 |
tcgccaatcaaagtagatactactgtgacctccgcctgaagacaaggtgaaaaaattgatgaaaatattatctaagtaattttgagaatcaaagactaga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29357166 |
tcgccaatcaaagtagatactactgtgacctccgcctgaagacaaggtgaaaaaattgatgaaaatattatctaagtaattttgagaatcaaagacaaga |
29357067 |
T |
|
| Q |
330 |
caattaagcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnn |
429 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357066 |
caataaagcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttatttt |
29356967 |
T |
|
| Q |
430 |
nnncaacacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttgattc |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29356966 |
tttcaacacaacaaccatataacttaaccaaattttcatgctctacttcggagatcacgttaatctctgtcaagaactccttcaccccttgttttgattc |
29356867 |
T |
|
| Q |
530 |
cgctgaaagaacttttatagcagcaagttttccatttttcagtcgtctctgctcctccaca |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |
|
|
| T |
29356866 |
cgctgaaagaacttttatagcagcaagttttccatttttcagtcgtccctgatcatccaca |
29356806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 29364230 - 29364009
Alignment:
| Q |
30 |
gttcctgctacacgtgtgctgacatgagtcacgtttgcaggcataagctttgcaagaccgaagtcggaaatcttgggtgtcaggtctttgtcaaggagaa |
129 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||| || ||||||||||||||||| || || |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
29364230 |
gttcctgccacacgtgtgctgacatgagtcgcatttgctggaataagctttgcaagaccaaaatcagaaatcttcggtgtaaggtctttgtcaaggagaa |
29364131 |
T |
|
| Q |
130 |
tattgcttgcttttatatccctatgaatgataggaggcctaacttcttcatgtagaaaggcaagcccgcgtgcaatgccaacacatattctacatcgcgt |
229 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||| || || |
|
|
| T |
29364130 |
tattgctagcttttatatccctatgaatgataggaggcctgacttcttcatgaagaaaggcaagcccacgtgcaacgccaatacatattctacaccgtgt |
29364031 |
T |
|
| Q |
230 |
tcgccaatcaaagtagatacta |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29364030 |
tcgccaatcaaagtagatacta |
29364009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 361 - 590
Target Start/End: Complemental strand, 29363803 - 29363574
Alignment:
| Q |
361 |
atttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaacacaacaaccatataacttaaccaa |
460 |
Q |
| |
|
||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29363803 |
atttacctagaagtgttcgtgaaagactgttattctcaaggtaattgtagactaatatcctgttatttttttcaacacaacaaccatataacttaaccaa |
29363704 |
T |
|
| Q |
461 |
attttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttatagcagcaagtttt |
560 |
Q |
| |
|
|||||| ||||||||| ||||||| || |||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||| |||||| |
|
|
| T |
29363703 |
attttcatgctctactgcggagatcacattaatctctgtcaagaactctttcaccccttgtcttgattcagccgaaagaacttttatagcagcgagtttt |
29363604 |
T |
|
| Q |
561 |
ccatttttcagtcgtctctgctcctccaca |
590 |
Q |
| |
|
||| ||| ||||||| ||| || |||||| |
|
|
| T |
29363603 |
ccacctttaagtcgtccctgatcatccaca |
29363574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 83 - 576
Target Start/End: Complemental strand, 35536087 - 35535606
Alignment:
| Q |
83 |
aagaccgaagtcggaaatcttgggtgtcaggtctttgtcaaggagaatattgcttgcttttatatccctatgaatgataggaggcctaacttcttcatgt |
182 |
Q |
| |
|
|||||| || || |||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |
|
|
| T |
35536087 |
aagaccaaaatccgaaatcttcggtgtaagatctttgtcaaggagaatattgcttgcttttgtatccctatgaatgataggaggcctgacttcttcgtgc |
35535988 |
T |
|
| Q |
183 |
agaaaggcaagcccgcgtgcaatgccaacacatattctacatcgcgttcgccaatcaaagtagatactactgtgacctccgcctgaagacaaggtgaaaa |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
35535987 |
agaaaggcaagcccgcgtgcaatgtcaacacatattctacatcgcgttcgccaatcaaagtagatactactgtgacctccaactgaagagaagaggaaaa |
35535888 |
T |
|
| Q |
283 |
aattgatgaaaatattatctaagtaattttgagaatcaaagactagacaattaagcatccatgaatttagaaaaatttatttacctagaagagtttgtga |
382 |
Q |
| |
|
||| || | ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
35535887 |
aatc------------atttgagtaattttgagaatcaaagattagacaataaagcatccatgaatttggaaaaattcatttacctagaagagtttgtga |
35535800 |
T |
|
| Q |
383 |
aaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaacacaacaaccatataacttaaccaaattttcctgctctacttcggag |
482 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||| |
|
|
| T |
35535799 |
aaggctattattctcaaggtagttgtagattaatatcctgctatttctttcaacacaacaaccatacaacttaaccaaattttaatgctctacttcagag |
35535700 |
T |
|
| Q |
483 |
attacgttaatctctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttatagcagcaagttttccatttttcagtcgtc |
576 |
Q |
| |
|
|| || ||||||| ||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35535699 |
atcacactaatctccgtcaagaactctttcgccccttgtcttgattcagctgaaagaacttttatagcagcaagttttccatttttcagtcgtc |
35535606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 83 - 576
Target Start/End: Original strand, 27005156 - 27005637
Alignment:
| Q |
83 |
aagaccgaagtcggaaatcttgggtgtcaggtctttgtcaaggagaatattgcttgcttttatatccctatgaatgataggaggcctaacttcttcatgt |
182 |
Q |
| |
|
|||||| || || |||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |
|
|
| T |
27005156 |
aagaccaaaatccgaaatcttcggtgtaagatctttgtcaaggagaatattgcttgcttttgtatccctatgaatgataggaggcctgacttcttcgtgc |
27005255 |
T |
|
| Q |
183 |
agaaaggcaagcccgcgtgcaatgccaacacatattctacatcgcgttcgccaatcaaagtagatactactgtgacctccgcctgaagacaaggtgaaaa |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
|
|
| T |
27005256 |
agaaaggcaagcccgcgtgcaatgtcaacacatattatacatcgagttcgccaatcaaagtagatactactgtgacctccaactgaagagaagaggaaaa |
27005355 |
T |
|
| Q |
283 |
aattgatgaaaatattatctaagtaattttgagaatcaaagactagacaattaagcatccatgaatttagaaaaatttatttacctagaagagtttgtga |
382 |
Q |
| |
|
||| || | ||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
27005356 |
aatc------------atatgagtaattttgagaatcaaagattagacaataaagcatccatgaatttggaaaaattcatttacctagaagagtttgtga |
27005443 |
T |
|
| Q |
383 |
aaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaacacaacaaccatataacttaaccaaattttcctgctctacttcggag |
482 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||||||||| ||||||||||| ||| |
|
|
| T |
27005444 |
aaggctattattctcaaggtaattgtagaataatatcctgctatttctttcaacacaacaaccatacaacttaaccaaattttaatgctctacttcagag |
27005543 |
T |
|
| Q |
483 |
attacgttaatctctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttatagcagcaagttttccatttttcagtcgtc |
576 |
Q |
| |
|
|| || ||||||| ||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005544 |
atcacactaatctccgtcaagaactctttcgccccttgtcttgattcagctgaaagaacttttatagcagcaagttttccatttttcagtcgtc |
27005637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 336 - 526
Target Start/End: Original strand, 32570362 - 32570552
Alignment:
| Q |
336 |
agcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaa |
435 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
32570362 |
agcatccatgaatttgaaaaaattcatttacctagaagagtttgttaaaggctattattctcaaggtaattgtagactaatatcctgctatttctttcaa |
32570461 |
T |
|
| Q |
436 |
cacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttga |
526 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
32570462 |
cacaacaaccatacaacttaaccaaattttcatgctctacttcagagatcacattaatctctgtcaagaactctttcaccccttgtcttga |
32570552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 21528454 - 21528222
Alignment:
| Q |
30 |
gttcctgctacacgtgtgctgacatgagtcacgtttgcaggcataagctttgcaagaccgaagtcggaaatcttgggtgtcaggtctttgtcaaggagaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || || || ||||||||||||||||| || |||||||| ||||| || |||||||| ||||||| |
|
|
| T |
21528454 |
gttcctgctacacgtgtgctgacatgagtcatgtatgatggaatcagctttgcaagaccgaaatctgaaatcttaggtgtaagatctttgtcgaggagaa |
21528355 |
T |
|
| Q |
130 |
tattgcttgcttttatatccctatgaatgataggaggcctaacttcttcatgtagaaaggcaagcccgcgtgcaatgccaacacatattctacatcgcgt |
229 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| | ||| ||||| ||||| ||||||||||| || ||||||| |||| ||||| |||| ||| || |
|
|
| T |
21528354 |
tattgcttgcttttatatccctgtgaacaatatgtggcagtacttcctcatggagaaaggcaagtccacgtgcaactccaaggcatatcctacgtcgtgt |
21528255 |
T |
|
| Q |
230 |
tcgccaatcaaagtagatactactgtgacctcc |
262 |
Q |
| |
|
| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
21528254 |
ttgccaatcgaagtagatattactgtgacctcc |
21528222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 361 - 547
Target Start/End: Complemental strand, 21528097 - 21527911
Alignment:
| Q |
361 |
atttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaacacaacaaccatataacttaaccaa |
460 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||| | | ||||| |||||||| | ||||||| |
|
|
| T |
21528097 |
atttacctagaagggtttgtgaaaggctattgttctcgaggtaattgtagactaatattctgtgatctccttcgacacagcaaccatagagtataaccaa |
21527998 |
T |
|
| Q |
461 |
attttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttat |
547 |
Q |
| |
|
|||||| |||| || ||| || || || |||||||| |||||||| ||||||||||| ||||||||||| | ||||| |||||||| |
|
|
| T |
21527997 |
attttcatgctttatttccgaaatcacattaatctcagtcaagaattccttcaccccctgttttgattcagtcgaaaggacttttat |
21527911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 22590850 - 22590742
Alignment:
| Q |
53 |
atgagtcacgtttgcaggcataagctttgcaagaccgaagtcggaaatcttgggtgtcaggtctttgtcaaggagaatattgcttgcttttatatcccta |
152 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| || || || ||||| |||||| || ||| ||||||| | |||||||| ||||||||||| ||| |
|
|
| T |
22590850 |
atgagtcaggtttggggggataagctttgcaaggccaaaatctgaaattttgggttggagatctatgtcaagtaatatattgctggcttttatatctcta |
22590751 |
T |
|
| Q |
153 |
tgaatgata |
161 |
Q |
| |
|
||||||||| |
|
|
| T |
22590750 |
tgaatgata |
22590742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 550
Target Start/End: Complemental strand, 22590184 - 22590129
Alignment:
| Q |
495 |
tctgtcaagaactccttcaccccttgttttgattccgctgaaagaacttttatagc |
550 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
22590184 |
tctgtcaagaactcttggaccccttgttttgattcagctgataaaacttttatagc |
22590129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 21516635 - 21516597
Alignment:
| Q |
96 |
gaaatcttgggtgtcaggtctttgtcaaggagaatattg |
134 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
21516635 |
gaaatcttaggtgtaaggtctttgtcaaggagaatattg |
21516597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 336 - 526
Target Start/End: Original strand, 1615875 - 1616065
Alignment:
| Q |
336 |
agcatccatgaatttagaaaaatttatttacctagaagagtttgtgaaaggctattattctcaaggtaattgtagactaatatcctgttannnnnnncaa |
435 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1615875 |
agcatccatgaatttgaaaaaattcatttacctagaagagtttgttaaaggctattattctcaaggtaattgtagactaatatcctgctatttctttcaa |
1615974 |
T |
|
| Q |
436 |
cacaacaaccatataacttaaccaaattttcctgctctacttcggagattacgttaatctctgtcaagaactccttcaccccttgttttga |
526 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||| ||||| || |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
1615975 |
cacaacaaccatacaacttaaccaaattttcatgctctacttaagagatcacattaatctctgtcaagaactctttcaccccttgtcttga |
1616065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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