View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_27 (Length: 267)
Name: NF0193_low_27
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 43869347 - 43869113
Alignment:
| Q |
30 |
acatgcaccaaatattaatcaatccaagtttgcagaaaagcaaacatggaagttaattaataaccagttgatgatattcatgtcagtggtaattagttgg |
129 |
Q |
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| T |
43869347 |
acatgcaccaaatattaatcaatccaaatttgcagaaaagcaaacatggaagttaattaataaccagttgatgatattcatgtcagtggtaattagttgg |
43869248 |
T |
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| Q |
130 |
aaaagaagttgctcctcctccagcaaaacatgctgtcctcttaacaaaacgacctttcattcttggtctcttttctgcattcaatttccttacttcatat |
229 |
Q |
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| T |
43869247 |
aaaagaagttgctcctcc---agcaaaacatgctgtcctcttaacaaaacgacctttcattcttggtctcttttctgcattcaatttccttacttcatat |
43869151 |
T |
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| Q |
230 |
cttatcttctttgcaaacaaacgtgttcttcttttctc |
267 |
Q |
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| T |
43869150 |
cttatcttctttgcaaacaaacgtgttcttcttttctc |
43869113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 50054578 - 50054656
Alignment:
| Q |
182 |
cctttcattcttggtctcttttctgcattcaatttccttacttcatatcttatcttctttgcaaacaaacgtgttcttc |
260 |
Q |
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| T |
50054578 |
cctttcattcttggtctcttctctgcattcaatttcctaacctcgtaccttattttctttgagaacaaccttgttcttc |
50054656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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