View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0193_low_28 (Length: 266)
Name: NF0193_low_28
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_28 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 33814500 - 33814292
Alignment:
| Q |
35 |
acatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814500 |
acatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgt |
33814401 |
T |
|
| Q |
135 |
aattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccac |
234 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33814400 |
aattcatctgaggaatctctccccctgaattgtgcaccacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccac |
33814301 |
T |
|
| Q |
235 |
gtctctgct |
243 |
Q |
| |
|
||||||||| |
|
|
| T |
33814300 |
gtctctgct |
33814292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 9754645 - 9754853
Alignment:
| Q |
35 |
acatcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgt |
134 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||| |
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| T |
9754645 |
acatcctcatctgccatctgctcttcatgcattgcttgattttggtctatatgatcaggctcatccatctgattgggttctgttagctgatcacgatcgt |
9754744 |
T |
|
| Q |
135 |
aattcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccac |
234 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || || ||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
9754745 |
aattcatctgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctaatcttcatagaataccac |
9754844 |
T |
|
| Q |
235 |
gtctctgct |
243 |
Q |
| |
|
|||||||| |
|
|
| T |
9754845 |
atctctgct |
9754853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 36 - 243
Target Start/End: Original strand, 13563825 - 13564032
Alignment:
| Q |
36 |
catcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgta |
135 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
13563825 |
catcatcatctgccatatgctcttcatgcattgcttgattttggtctatctgatcaggctcatccatctgattgggttctgttagctgatcacgatcgta |
13563924 |
T |
|
| Q |
136 |
attcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacg |
235 |
Q |
| |
|
|||||| |||||||||||||||| |||||| || || ||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
13563925 |
attcatttgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtgaattgtctgatcttcatagaataccaca |
13564024 |
T |
|
| Q |
236 |
tctctgct |
243 |
Q |
| |
|
|||||||| |
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|
| T |
13564025 |
tctctgct |
13564032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 54969548 - 54969752
Alignment:
| Q |
36 |
catcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgta |
135 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||||||| |||| || |
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|
| T |
54969548 |
catcatcatctgccatatgctcttcatgtattgcttgattttggtctacctgatcaggctcatccatctgattgggttctgttagctgatcacgatcata |
54969647 |
T |
|
| Q |
136 |
attcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacg |
235 |
Q |
| |
|
|||||| |||||||||||||||| |||||| || || ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54969648 |
attcatttgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtggattgtctgatcttcatagaataccaca |
54969747 |
T |
|
| Q |
236 |
tctct |
240 |
Q |
| |
|
||||| |
|
|
| T |
54969748 |
tctct |
54969752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 4285562 - 4285666
Alignment:
| Q |
53 |
tgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaattcatctgaggaatct |
152 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| |||||| ||| || ||||| ||| |||| || | ||||||| ||||| |||||| |||||||||| |
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|
| T |
4285562 |
tgctcttcctgcattgcttggttttgttatatgtgatcaagctacttcatcttattgggttgtgctttctgatcacaatcgttattcatttgaggaatct |
4285661 |
T |
|
| Q |
153 |
ctccc |
157 |
Q |
| |
|
||||| |
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|
| T |
4285662 |
ctccc |
4285666 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 36 - 240
Target Start/End: Complemental strand, 599 - 395
Alignment:
| Q |
36 |
catcatcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgta |
135 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
599 |
catcatcatctgccatatgctcttcatgcattgcttgattttggtctatctgatcaggctcatccatctgattgggttctgttagctgatcacgatcgta |
500 |
T |
|
| Q |
136 |
attcatctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacg |
235 |
Q |
| |
|
|||||| |||||||||||||||| |||||| || || ||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
499 |
attcatttgaggaatctctccccctgaattgtgtaccacaatggcctttggcttattagattgaatgtcgtgtattgtctgatcttcatagaataccaca |
400 |
T |
|
| Q |
236 |
tctct |
240 |
Q |
| |
|
||||| |
|
|
| T |
399 |
tctct |
395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 39 - 243
Target Start/End: Original strand, 4837855 - 4838059
Alignment:
| Q |
39 |
catcatatgccatctgctcttcatgcattgcttgattttgttctatctgatcaggctcctccatctgatttggttctgttagctgatcatgatcgtaatt |
138 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||| |
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|
| T |
4837855 |
catcatctgccatatgctcttcatgcattgcttgattttggtctatctgatcaggctcatccatctgattgggttatgttagctgatcacgatcgtaatt |
4837954 |
T |
|
| Q |
139 |
catctgaggaatctctccccttgaattttgcactacaatggtctttggctttttagattgaatgtcgtggatcgtctgatcttcatagaataccacgtct |
238 |
Q |
| |
|
||| |||||||||||||||| |||||| || || ||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
4837955 |
catttgaggaatctctccccctgaattgtgtaccacaatcgcctttggcttattagattgaatgtcgtggattgtctgatcttcatagaataccacatct |
4838054 |
T |
|
| Q |
239 |
ctgct |
243 |
Q |
| |
|
||||| |
|
|
| T |
4838055 |
ctgct |
4838059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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