View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_29 (Length: 265)
Name: NF0193_low_29
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_29 |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 9231742 - 9231966
Alignment:
| Q |
16 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
9231742 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaa |
9231841 |
T |
|
| Q |
116 |
atcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9231842 |
atcataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttc |
9231941 |
T |
|
| Q |
216 |
aggggattccgccaattctcttgat |
240 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
9231942 |
agcggattccgccaattctcttgat |
9231966 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 18351024 - 18350800
Alignment:
| Q |
16 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
18351024 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaa |
18350925 |
T |
|
| Q |
116 |
atcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18350924 |
atcataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttc |
18350825 |
T |
|
| Q |
216 |
aggggattccgccaattctcttgat |
240 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
18350824 |
agcggattccgccaattctcttgat |
18350800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 16902426 - 16902202
Alignment:
| Q |
16 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaa |
115 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||| || || |||||| ||||||| ||| |
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| T |
16902426 |
atcgattataaaacaaatacatcatctgtgagtataatttgagatactcggggttctccccttctgaatcatcacttctaggaagaacctacttaaaaaa |
16902327 |
T |
|
| Q |
116 |
atcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttc |
215 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16902326 |
atcataattacaggacctcaccgcttattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaggtggtttc |
16902227 |
T |
|
| Q |
216 |
aggggattccgccaattctcttgat |
240 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
16902226 |
agcagattccgccaattctcttgat |
16902202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 2914230 - 2914006
Alignment:
| Q |
16 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaa |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||| |
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| T |
2914230 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttatgaatcattaattccagtaaaaacatacttaagaaa |
2914131 |
T |
|
| Q |
116 |
atcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttc |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2914130 |
atcataattacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttc |
2914031 |
T |
|
| Q |
216 |
aggggattccgccaattctcttgat |
240 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
2914030 |
aggggattccgccaattctcttgat |
2914006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 6488710 - 6488489
Alignment:
| Q |
19 |
gattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatc |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |
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| T |
6488710 |
gattataaaacaaatacatcatatgtgactttaatttgagatactcatggttcttccattctgaatcatcaattctagtaagaacatacttaagaaaatc |
6488611 |
T |
|
| Q |
119 |
ataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
218 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488610 |
ataagtacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagg |
6488511 |
T |
|
| Q |
219 |
ggattccgccaattctcttgat |
240 |
Q |
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|||||||||||||| ||||||| |
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| T |
6488510 |
ggattccgccaattttcttgat |
6488489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 17650019 - 17650239
Alignment:
| Q |
20 |
attataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
17650019 |
attataaaacaaatacatcatctgtgactttaatctgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatca |
17650118 |
T |
|
| Q |
120 |
taattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggg |
219 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17650119 |
tagttacatgaccttaccgcatattgattattaaagaatcgaagttgatgtgcttttagaaaagaggatatcaatgaacttctatgaaatggtttcaggg |
17650218 |
T |
|
| Q |
220 |
gattccgccaattctcttgat |
240 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
17650219 |
gattccgccaattctcttgat |
17650239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 20635555 - 20635723
Alignment:
| Q |
16 |
atcgattataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaa |
115 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |
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|
| T |
20635555 |
atcgattatgaaacaaatacatcatc----actttaatttgagatactcatggttcttcccttctgaatcatcaatttcagtaagaacatatttaagaaa |
20635650 |
T |
|
| Q |
116 |
atcataattacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggat |
188 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
20635651 |
atcataattacatgaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggat |
20635723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 1096 - 1001
Alignment:
| Q |
145 |
gattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat |
240 |
Q |
| |
|
||||||| |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
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|
| T |
1096 |
gattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgat |
1001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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