View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_34 (Length: 251)
Name: NF0193_low_34
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_34 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 41578473 - 41578247
Alignment:
| Q |
28 |
caatatctagatagaggagaagaacaagtagagataattctaggctcattagtaagtgagacgtcaagtttattgagtcaatctgaatctacacaagagt |
127 |
Q |
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| T |
41578473 |
caatatctggatagaggagaagaacaagtagagataattctaggctcattagtaagtgagacgtcaagtttattgagtcaatctgaatctacacaagagt |
41578374 |
T |
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| Q |
128 |
ttcattcatat---aagatataaacaaacccaacatttcaatctctcaacatataagaacgaattttatcaatcaaaggagcagggtgatttagtaggat |
224 |
Q |
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| T |
41578373 |
ttcattcatataagaagatataaacaaaaccaacatttcaatctcttaacatataagaacgaattttatcaatcaaaggagcagggtgagttagtaggat |
41578274 |
T |
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| Q |
225 |
ctcgtccttgataaacgtcaaagttgt |
251 |
Q |
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| T |
41578273 |
ctcgtccttgataaacgtcaaagttgt |
41578247 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 24048525 - 24048470
Alignment:
| Q |
147 |
aacaaacccaacatttcaatctctcaacatataagaacgaattttatcaatcaaag |
202 |
Q |
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| T |
24048525 |
aacaaacccaacatttcaatttcttaacatctaagaacaaattttatcaatcaaag |
24048470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 11147457 - 11147507
Alignment:
| Q |
147 |
aacaaacccaacatttcaatctctcaacatataagaacgaattttatcaat |
197 |
Q |
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| T |
11147457 |
aacaaaaccaacatttcaatctctcaacgtataaggacaaagtttatcaat |
11147507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 31795043 - 31795131
Alignment:
| Q |
119 |
cacaagagtttcattcatataagatataaacaaacccaacatttcaatctctcaacatataagaacgaattttatcaatcaaaggagca |
207 |
Q |
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| T |
31795043 |
cacaagagtttccttcacgcaaggtatgaacaaaactaatatttcaatctctcaacaaataagaacaaatttaatcaatcaaagcagca |
31795131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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