View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_37 (Length: 251)
Name: NF0193_low_37
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_37 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 26352999 - 26353227
Alignment:
| Q |
30 |
attatggagcacagtttttacaagaaaaaaggcatattatacggagcattcagaaaatcgtgagaaaaatgaaagatgatgcagaaagaaattgacagca |
129 |
Q |
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| T |
26352999 |
attatggagcacagtttgtacaagaaaaaaggcatattatacggagcattcagaaaatcgtgagaaaaatgaaagatgatgcagaaagaaattgacagca |
26353098 |
T |
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| Q |
130 |
gaggatcttgatccattctgatttttgtccaacag-----agatttgaaaatctgtgttttga--atacaagagaaattaaagctacattaagttactaa |
222 |
Q |
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| T |
26353099 |
gaggatctagatccattctgatttttgtccaacagatttaagatttgaaaatctgtgttttgactgtacaagagaaattaaagttacattaagttactca |
26353198 |
T |
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| Q |
223 |
tgatgaaattaggaaagagatatgcttca |
251 |
Q |
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| T |
26353199 |
tgatgaaattaggaaagagttatgcttca |
26353227 |
T |
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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 20014371 - 20014451
Alignment:
| Q |
80 |
cagaaaatcgtgagaaaaatgaaagatgatgcagaaagaaattgacagcagaggatcttgatccattctgatttttgtcca |
160 |
Q |
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| T |
20014371 |
cagaaaatcatgagaaaaataaaagacggtgcagaaagaaattgacagcagaggatcaagatccattctgatttttgtcca |
20014451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 26649056 - 26648882
Alignment:
| Q |
84 |
aaatcgtgagaaaaatgaaagatgatgcagaaagaaattgacagcagaggatcttgatccattctgatttttgtccaacag-----agatttgaaaatct |
178 |
Q |
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||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||||||||| | ||| ||||||| ||| | |
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| T |
26649056 |
aaatcatgagaaaaatgaaagatgatgcagaaacaaatctacagcagaggatctagatccattctaatttttgtcaagcagatttaagatttgcgaattt |
26648957 |
T |
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| Q |
179 |
gtgttttg--aatacaagagaaattaaagctacattaagttactaatgatgaaattaggaaagagatatgcttca |
251 |
Q |
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|||||||| || ||||||||| ||||||||||||| ||||| |||| |||||| | ||||| ||||||||| |
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| T |
26648956 |
gtgttttggctgtaaaagagaaataaaagctacattaaattactcatgaaaaaattaaggaagagttatgcttca |
26648882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 1719069 - 1719012
Alignment:
| Q |
80 |
cagaaaatcgtgagaaaaatgaaagatgatgcagaaagaaattgacagcagaggatct |
137 |
Q |
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| T |
1719069 |
cagaaaatcatatgaaaaatacaagatgatacagaaagaaattgacagcagaggatct |
1719012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 1718995 - 1718955
Alignment:
| Q |
211 |
ttaagttactaatgatgaaattaggaaagagatatgcttca |
251 |
Q |
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| T |
1718995 |
ttaacttactcatgatgaaattaggaaagagttatgcttca |
1718955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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