View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_40 (Length: 248)
Name: NF0193_low_40
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21549931 - 21550153
Alignment:
| Q |
1 |
tttagagtttcatttctttcttaatttgatctgcgaaccattatgcctgtattttctcccattgaatgactccaagttgttatgtcacagtcatttataa |
100 |
Q |
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| T |
21549931 |
tttagagtttcatttctttcttaatttgatctgcgaaccattatgcctgtattttctcccattgaatgactccaagttgttatgtcatagtcatttatta |
21550030 |
T |
|
| Q |
101 |
cttccattgct--aaattcatgtctcataattcatgattgtggaaagctgaaaccgtgtattagatcttaacctgatctgaaattaagttaatgtgatct |
198 |
Q |
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| T |
21550031 |
cttccattgctaaaaattcatgtctcataattcatgattgtggaaagctgaaaccgtgtattagatcttaacctgatctgaaattaagttaacgtgatct |
21550130 |
T |
|
| Q |
199 |
ttgcctttgtggtttgatatttg |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
21550131 |
ttgcctttgtggtttgatatttg |
21550153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20362233 - 20362440
Alignment:
| Q |
1 |
tttagagtttcatttctttcttaatttgatctgcgaaccattatgcctgtattttctcccattgaatgactccaagttgttatgtcacagtcatttataa |
100 |
Q |
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| T |
20362233 |
tttagagtttcgtttcttttttaatttgatccgcgaaccattatgtctg------ctcccattgaatgactagaagttgttatgtcacagtcatttatta |
20362326 |
T |
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| Q |
101 |
cttccattgctaaattcatgtctcataattcatgattgtggaaagctgaaaccgtgtattagatcttaacctgatctgaaattaagttaatgtgatct-- |
198 |
Q |
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| T |
20362327 |
cttccattgctaaattcatgtctcataattcatgattgtggaatgctgaaaccgtgtattagatc---------tctgaaattaagttaatgtgatcttc |
20362417 |
T |
|
| Q |
199 |
ttgcctttgtggtttgatatttg |
221 |
Q |
| |
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| T |
20362418 |
ttgcctttgtggtttgatatttg |
20362440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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