View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_43 (Length: 231)
Name: NF0193_low_43
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 27521366 - 27521501
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
27521366 |
aaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgggcagatgatgatgatggtga |
27521465 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
27521466 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
27521501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 27462069 - 27461934
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
27462069 |
aaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatgatggtga |
27461970 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
27461969 |
acggcgtttgacagtgttgttgtgagtgtgatgatg |
27461934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 27482208 - 27482073
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
27482208 |
aaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatgatggtga |
27482109 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
27482108 |
acggcgtttgacagtgttgttgtgagtgtgatgatg |
27482073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 18986165 - 18986034
Alignment:
| Q |
5 |
aagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtgaacgg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | |
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| T |
18986165 |
aagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttggtgagcagatgatgatgatggtgaacag |
18986066 |
T |
|
| Q |
105 |
cgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
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||||||||| ||||||||||| ||||||||| |
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| T |
18986065 |
agtttgacagtgttgttgtgagggtgatgatg |
18986034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 29569731 - 29569867
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
29569731 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttggtgagcagatgatgatgatggtga |
29569830 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatgt |
137 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
29569831 |
acggcgtttgacagagttgttgtgagtgtgatgatgt |
29569867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1758217 - 1758082
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
1758217 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatgatggtga |
1758118 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| |
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| T |
1758117 |
acggcgtttgacagagtttttgtgagagtgatgatg |
1758082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 27918719 - 27918584
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
27918719 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttggtgagcagaagatgatgatggtga |
27918620 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
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| T |
27918619 |
actgcgtttgacagagttgttgtgagtgtgatgatg |
27918584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 29568400 - 29568535
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
29568400 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaagatgatgatggtga |
29568499 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
|
| ||||||||| |||||| ||||||||||||||||| |
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| T |
29568500 |
atggcgtttgaaagagtttttgtgagtgtgatgatg |
29568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 29168324 - 29168189
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||||| |
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| T |
29168324 |
aaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttggtgagcagaagatgatgatggtga |
29168225 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
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|
| T |
29168224 |
acgacgtttgacagagttgttgtgagtgtgatgatg |
29168189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 29425365 - 29425232
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgat---gg |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
29425365 |
aaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatgatgatggtgg |
29425266 |
T |
|
| Q |
98 |
tgaacggcgtttgacagagttgttgtgagtgtga |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29425265 |
tgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 25518553 - 25518418
Alignment:
| Q |
1 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatgatggtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||| |
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| T |
25518553 |
aaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaagatgatgatggtga |
25518454 |
T |
|
| Q |
101 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518453 |
acggcgtttgacagagttgttgtgagtgtgatgatg |
25518418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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