View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0193_low_47 (Length: 215)
Name: NF0193_low_47
Description: NF0193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0193_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 5347501 - 5347437
Alignment:
| Q |
51 |
acatcatcaaaatcttcatcttcaacatggaaacaagtttcagaattactcacagtagcttccat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5347501 |
acatcatcaaaatcttcatcttcaacatggaaacaagtttcagaattactcacagtagcttccat |
5347437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 5347371 - 5347343
Alignment:
| Q |
181 |
tccacaaaatcctctcaaacccatcactt |
209 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
5347371 |
tccacaaaatcctctcaaacccatcactt |
5347343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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