View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0194_high_10 (Length: 257)
Name: NF0194_high_10
Description: NF0194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0194_high_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 657336 - 657109
Alignment:
| Q |
30 |
atcaaaaatagaactgccacaaagcaacaatcataaatagaagcaactgtcatcaaagttttgttagccataccatcttcagaaatgccaagtgcttcct |
129 |
Q |
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| T |
657336 |
atcataaatagaactgccacaaagcaacaatcataaatagaagcaactgtcatcaaagttttgttagccataccatcttcagaaatgccaagtgcttcct |
657237 |
T |
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| Q |
130 |
tgttcggtggattgacaactataactggcttatcctcaccggcatcagcttcgtcatcatattttctgtgcatttctaatatccattcatgatattcttg |
229 |
Q |
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| T |
657236 |
tgttcgctggattgacaactataactggcttatcctcaccggcatcagcttcgtcatcatattttctgtgcatttctaatatccattcatgatattcttg |
657137 |
T |
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| Q |
230 |
ttctatttgtgaaggagttaatattttt |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
657136 |
ttctatttgtgaaggagttaatattttt |
657109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 689784 - 689656
Alignment:
| Q |
61 |
cataaatagaagcaactgtcatcaaagttttgttagccataccatcttcagaaatgccaagtgcttccttgttcggtggattgacaactataactggctt |
160 |
Q |
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||||||||||||||| || ||||||| ||| ||||| ||||||||| || |||||||||||||||| |||||| || |||||||||| |||||||||||| |
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| T |
689784 |
cataaatagaagcaattgccatcaaaattt-gttagtcataccatcatcggaaatgccaagtgctttcttgtttggcggattgacaagtataactggctt |
689686 |
T |
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| Q |
161 |
atcctcaccggcatcagcttcgtcatcata |
190 |
Q |
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||| ||||||||||||||||| |||||||| |
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| T |
689685 |
atcgtcaccggcatcagcttcttcatcata |
689656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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