View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0194_low_10 (Length: 261)

Name: NF0194_low_10
Description: NF0194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0194_low_10
NF0194_low_10
[»] chr3 (4 HSPs)
chr3 (35-242)||(11006352-11006558)
chr3 (93-236)||(11015921-11016064)
chr3 (90-236)||(11024933-11025079)
chr3 (132-242)||(47452297-47452407)
[»] chr4 (27 HSPs)
chr4 (135-236)||(7813061-7813162)
chr4 (132-236)||(7822547-7822651)
chr4 (135-236)||(7800218-7800319)
chr4 (132-242)||(7904610-7904720)
chr4 (133-240)||(7907904-7908011)
chr4 (132-242)||(7770982-7771092)
chr4 (132-236)||(7238116-7238220)
chr4 (138-242)||(45372447-45372551)
chr4 (133-236)||(7774225-7774328)
chr4 (132-222)||(7789667-7789757)
chr4 (133-235)||(49044626-49044728)
chr4 (136-235)||(48862823-48862922)
chr4 (133-236)||(48902529-48902632)
chr4 (131-235)||(33134223-33134327)
chr4 (135-235)||(45366618-45366718)
chr4 (134-234)||(48156825-48156925)
chr4 (133-236)||(7877299-7877402)
chr4 (168-234)||(48735713-48735779)
chr4 (134-235)||(48170986-48171087)
chr4 (170-235)||(49048996-49049061)
chr4 (133-222)||(50668622-50668711)
chr4 (131-231)||(37827395-37827495)
chr4 (135-235)||(48898303-48898403)
chr4 (132-236)||(49041534-49041638)
chr4 (132-236)||(50251204-50251308)
chr4 (136-235)||(48148082-48148181)
chr4 (165-222)||(48891020-48891077)
[»] chr8 (6 HSPs)
chr8 (144-242)||(12199897-12199995)
chr8 (144-242)||(12444325-12444423)
chr8 (138-242)||(4032306-4032410)
chr8 (145-236)||(12194892-12194983)
chr8 (145-236)||(12439320-12439411)
chr8 (169-241)||(15348477-15348549)
[»] chr6 (1 HSPs)
chr6 (133-235)||(21015355-21015457)
[»] chr5 (4 HSPs)
chr5 (176-235)||(29712866-29712925)
chr5 (145-222)||(29687642-29687719)
chr5 (135-234)||(1812006-1812105)
chr5 (182-234)||(178647-178699)
[»] chr1 (4 HSPs)
chr1 (134-236)||(24339994-24340096)
chr1 (134-231)||(24415417-24415514)
chr1 (170-234)||(24322078-24322142)
chr1 (134-236)||(24309757-24309859)
[»] scaffold0508 (1 HSPs)
scaffold0508 (134-236)||(11842-11944)
[»] chr7 (1 HSPs)
chr7 (133-201)||(48883361-48883429)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 11006558 - 11006352
Alignment:
Q  35 tcatcaccaacgtagtaatactttatctttcaca-gtcatacaaattaaattagttacaattgcagagaaggaagacagatggagatgaagaccggcctg 133  Q
    |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11006558 tcatcaccaacgtagtaatactttatctttcacaagtcata--aattaaattagttacaattgcagagaaggaagacagatggagacgaagaccggcctg 11006461  T
Q  134 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006460 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 11006361  T
Q  234 ctgctcctc 242  Q
    ||| |||||    
T  11006360 ctgatcctc 11006352  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 11016064 - 11015921
Alignment:
Q  93 attgcagagaaggaagacagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttat 192  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| || ||    
T  11016064 attgcagaggaggaagacagatggagaagaagaccggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcat 11015965  T
Q  193 acgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 236  Q
    ||||||||| || ||||||||||||| |||| ||||||||||||    
T  11015964 acgtttcaaatgcgtttgtaagtcattgttagctcttatctctg 11015921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 11025079 - 11024933
Alignment:
Q  90 acaattgcagagaaggaagacagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcact 189  Q
    ||||||||| || ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||    
T  11025079 acaattgcataggaggaagacagatggagaagaagaccgacctgtatttgcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctct 11024980  T
Q  190 tatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 236  Q
     ||||||||||| || |||||||||||||||||| ||||||||||||    
T  11024979 catacgtttcaaatgcgtttgtaagtcatggttagctcttatctctg 11024933  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 47452407 - 47452297
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    ||||||| |||| ||||||||| || || |||||| ||||||||||||||||||| ||| |||| ||||||||  ||| ||||||||||||  |||||||    
T  47452407 tgtatctacctcttgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttat 47452308  T
Q  232 ctctgctcctc 242  Q
    ||||| |||||    
T  47452307 ctctgatcctc 47452297  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 7813061 - 7813162
Alignment:
Q  135 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctc 7813160  T
Q  235 tg 236  Q
    ||    
T  7813161 tg 7813162  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 7822547 - 7822651
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    |||||||||||||| | ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  |||||||    
T  7822547 tgtatctgcctcatcatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttat 7822646  T
Q  232 ctctg 236  Q
    |||||    
T  7822647 ctctg 7822651  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 7800218 - 7800319
Alignment:
Q  135 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||| ||||    
T  7800218 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctc 7800317  T
Q  235 tg 236  Q
    ||    
T  7800318 tg 7800319  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 7904610 - 7904720
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    ||||||| |||| ||||||||| || ||||||||| || ||||||| |||||||| |||||||||||||| ||||||||||||| ||||||  |||||||    
T  7904610 tgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttat 7904709  T
Q  232 ctctgctcctc 242  Q
    ||||| |||||    
T  7904710 ctctgatcctc 7904720  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 7907904 - 7908011
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 232  Q
    |||||| ||||||||||||||  | || ||| |  ||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||  ||||||||    
T  7907904 gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatc 7908003  T
Q  233 tctgctcc 240  Q
    ||||||||    
T  7908004 tctgctcc 7908011  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 7770982 - 7771092
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    ||||||||||||||||| | || || |||||  || ||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||  |||||||    
T  7770982 tgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttat 7771081  T
Q  232 ctctgctcctc 242  Q
    ||||| |||||    
T  7771082 ctctgatcctc 7771092  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 7238220 - 7238116
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    ||||||||||||||||| | ||||| |||||  || |||||||||| |||||||| |||||  ||||||| |||||||||||||| |||||  |||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttat 7238121  T
Q  232 ctctg 236  Q
    |||||    
T  7238120 ctctg 7238116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 45372551 - 45372447
Alignment:
Q  138 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgc 237  Q
    |||||||||||||||| || |||||  |  | ||||||||||||||||| |||||||||||||| |||||||||||||| |||||  || |||||||||     
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctga 45372452  T
Q  238 tcctc 242  Q
    |||||    
T  45372451 tcctc 45372447  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 7774328 - 7774225
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 232  Q
    |||||| |||||||||||||| || ||||||||| || || ||||||||||||| ||||| | |||||| ||||||||||||  ||||||  ||||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatc 7774229  T
Q  233 tctg 236  Q
    ||||    
T  7774228 tctg 7774225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 7789667 - 7789757
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 222  Q
    ||||||||||||||||| |||| || |||||  || ||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggtt 7789757  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 49044728 - 49044626
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 232  Q
    ||||||||||||||| |||||||| |  ||  || |||||||||| |||| ||| ||| |||||||||||||||||||||||| ||||||  ||||||||    
T  49044728 gtatctgcctcatgacttgatcatccttattctgctgaggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatc 49044629  T
Q  233 tct 235  Q
    |||    
T  49044628 tct 49044626  T

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Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 48862823 - 48862922
Alignment:
Q  136 tctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 235  Q
    ||||||||||||||||||||| | |||| || | ||||| ||||||||||| ||||| |||||||| || ||||| ||||| |||||  |||||||||||    
T  48862823 tctgcctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctct 48862922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 48902529 - 48902632
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 232  Q
    |||||| ||||||||||||||||| ||||| |||  | |||||||||| ||||| || || |||||||| |||||||||||||| |||||  |||||||     
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttata 48902628  T
Q  233 tctg 236  Q
    ||||    
T  48902629 tctg 48902632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 33134327 - 33134223
Alignment:
Q  131 ctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactctta 230  Q
    |||||||||||||||||||||||||| |  ||  ||||||| || ||||||||||| ||||| |||||||| || ||||||||| | || ||  ||||||    
T  33134327 ctgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctctta 33134228  T
Q  231 tctct 235  Q
    |||||    
T  33134227 tctct 33134223  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 45366718 - 45366618
Alignment:
Q  135 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    |||| |||||||||||||| || |||||| |  | ||||| || |||||||| ||||||||||||||||| ||||||||||  |||||  ||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctc 45366619  T
Q  235 t 235  Q
    |    
T  45366618 t 45366618  T

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Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 48156925 - 48156825
Alignment:
Q  134 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 233  Q
    |||||||| | ||||||||| || |||||| | ||  |||| ||||||||||| ||| ||||||||||||| ||||||||||| |||||  |||||||||    
T  48156925 tatctgccacttgaattgataattcaaatccttttatggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatct 48156826  T
Q  234 c 234  Q
    |    
T  48156825 c 48156825  T

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Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 7877299 - 7877402
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 232  Q
    |||||| |||||||||||||| || |||||| || |  |||||| ||||||||| |||||||||||||| ||  ||||||||  ||||||  ||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatc 7877398  T
Q  233 tctg 236  Q
    ||||    
T  7877399 tctg 7877402  T

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Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 48735779 - 48735713
Alignment:
Q  168 tgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    ||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||  ||||||||||    
T  48735779 tgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctc 48735713  T

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Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 48171087 - 48170986
Alignment:
Q  134 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 233  Q
    |||||| ||| |||||||||  | |||||  || |||||||  |||||||||| ||| |||||||||| |||||||||||||| |||||  |||||||||    
T  48171087 tatctggctcttgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatct 48170988  T
Q  234 ct 235  Q
    ||    
T  48170987 ct 48170986  T

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Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 49049061 - 49048996
Alignment:
Q  170 aggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 235  Q
    ||||||| ||||| ||| ||| |||||||||||||||||||||||| ||||||  |||||||||||    
T  49049061 aggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

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Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 50668622 - 50668711
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 222  Q
    |||||||| | | ||||||||||| ||||| ||| |||||||||| ||||| |  ||||||||||||||||| |||||||| || |||||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggtt 50668711  T

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Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 37827495 - 37827395
Alignment:
Q  131 ctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactctta 230  Q
    |||||||| |||||  | ||||||||  |||||||  |||||||| | |||||||| |||||| |||| |  || |||||||||||||||||||||||||    
T  37827495 ctgtatctacctcacaacttgatcatcgaaatcttactgaggttgtcagtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactctta 37827396  T
Q  231 t 231  Q
    |    
T  37827395 t 37827395  T

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Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 48898303 - 48898403
Alignment:
Q  135 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    |||| |||||||||||| |||| |||||  || ||||  | || |||||||| |||| |||||||||||||||||||||||| |||||  | ||||||||    
T  48898303 atcttcctcatgaattggtcattcaaattctgctgagtctacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctc 48898402  T
Q  235 t 235  Q
    |    
T  48898403 t 48898403  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 49041638 - 49041534
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    |||||||| |||||||||||||||| | |||  |  |||| ||||| |||||||| |||||  ||||||| || ||||| ||||| |||||  |||||||    
T  49041638 tgtatctgtctcatgaattgatcatcctaattctaatgagattgccagtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttat 49041539  T
Q  232 ctctg 236  Q
    |||||    
T  49041538 ctctg 49041534  T

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Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 50251308 - 50251204
Alignment:
Q  132 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    ||||||||||||| ||||||||||  ||||| ||  | |||||||| |||||| | |||||||  || ||||| |||| |||||| |||||  |||||||    
T  50251308 tgtatctgcctcacgaattgatcactcaaattttagttaggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttat 50251209  T
Q  232 ctctg 236  Q
    |||||    
T  50251208 ctctg 50251204  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 48148181 - 48148082
Alignment:
Q  136 tctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 235  Q
    ||||||| ||||||||||  | |||||| | |  ||||| || |||||||| ||||| |||||||| ||||| |||||||| |||||  |||||||||||    
T  48148181 tctgcctgatgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctct 48148082  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 48891020 - 48891077
Alignment:
Q  165 tgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 222  Q
    ||||||||||  |||| ||||| |||||||||||||| || ||||||||||| |||||    
T  48891020 tgttgaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggtt 48891077  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 12199897 - 12199995
Alignment:
Q  144 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgctcctc 242  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12199995  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 242
Target Start/End: Original strand, 12444325 - 12444423
Alignment:
Q  144 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgctcctc 242  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctc 12444423  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 4032410 - 4032306
Alignment:
Q  138 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgc 237  Q
    ||||||||||||||||||| ||||||||  ||||  | ||  ||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||     
T  4032410 tgcctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctga 4032311  T
Q  238 tcctc 242  Q
    |||||    
T  4032310 tcctc 4032306  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 12194892 - 12194983
Alignment:
Q  145 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 236  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||  ||||||||||||||||| ||||||||||||    
T  12194892 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12194983  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 12439320 - 12439411
Alignment:
Q  145 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctg 236  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || ||||||| ||  ||||||||||||||||| ||||||||||||    
T  12439320 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctg 12439411  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 15348477 - 15348549
Alignment:
Q  169 gaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgctcct 241  Q
    |||||| ||||||||||| |||||||||||||| || ||||||||||| |||||  |||||||||||| ||||    
T  15348477 gaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 15348549  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 21015355 - 21015457
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatc 232  Q
    |||||||||||| ||||||||||| | ||| ||||||||||| ||||| | ||| ||| |||||||||||||||||||||||| || |||  ||||||||    
T  21015355 gtatctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatc 21015454  T
Q  233 tct 235  Q
    |||    
T  21015455 tct 21015457  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 29712925 - 29712866
Alignment:
Q  176 ccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctct 235  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||  |||||||||||    
T  29712925 ccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctct 29712866  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 29687642 - 29687719
Alignment:
Q  145 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 222  Q
    |||||||||||| |||||| |  | | ||| || |||||||| |||||||| |||||||||||||||||||| |||||    
T  29687642 tgaattgatcattcaaatccttctaaagttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggtt 29687719  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 1812006 - 1812105
Alignment:
Q  135 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    |||| ||||| ||| ||||| | ||||| ||||||||||| || |||||||  || ||||||| ||| || |||||||||| ||||||  ||||||||||    
T  1812006 atcttcctcaggaactgatcgttcaaattttgttgaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctc 1812105  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 178647 - 178699
Alignment:
Q  182 aagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    ||||| ||||| |||||||| |||||||||||||| |||||| |||| |||||    
T  178647 aagtctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 24339994 - 24340096
Alignment:
Q  134 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 233  Q
    ||||| ||| ||||||||||||   |||||||  | ||||| ||||| ||||| ||||| |||||||| | ||||||||||||||||||  | |||||||    
T  24339994 tatcttcctgatgaattgatcaccaaaatcttagtaaggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatct 24340093  T
Q  234 ctg 236  Q
    |||    
T  24340094 ctg 24340096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 24415417 - 24415514
Alignment:
Q  134 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttat 231  Q
    ||||||||| ||||||||||||  |||||| | ||||| || ||||| ||||| ||||| |||||||| || ||| ||||||| |||||  |||||||    
T  24415417 tatctgcctgatgaattgatcacccaaatcctattgagattaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttat 24415514  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 24322078 - 24322142
Alignment:
Q  170 aggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctc 234  Q
    ||||||| ||||||||| ||||| |||||||| || ||||||||||| |||||  ||||||||||    
T  24322078 aggttgctggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctc 24322142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 24309757 - 24309859
Alignment:
Q  134 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 233  Q
    ||||||||| ||||||||||||   |||||||  | || || ||||| ||||| ||||| |||||||| |  |||||||||| ||||||  |||||||||    
T  24309757 tatctgcctgatgaattgatcaccaaaatcttagtaagattaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatct 24309856  T
Q  234 ctg 236  Q
    |||    
T  24309857 ctg 24309859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 11842 - 11944
Alignment:
Q  134 tatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatct 233  Q
    ||||| ||| ||||||||||||   |||||||  | ||||| ||| | ||||| ||||| |||||||| |  |||||||||||||||||  |||||||||    
T  11842 tatcttcctgatgaattgatcaccaaaatcttagtaaggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatct 11941  T
Q  234 ctg 236  Q
    |||    
T  11942 ctg 11944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 48883361 - 48883429
Alignment:
Q  133 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 201  Q
    ||||||||||| |||||| ||||| ||||| ||| ||||||| |  |||||||| ||| ||||||||||    
T  48883361 gtatctgcctcttgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaa 48883429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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