View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0194_low_3 (Length: 379)
Name: NF0194_low_3
Description: NF0194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0194_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 26258428 - 26258783
Alignment:
| Q |
1 |
cgtatcggaaccacatcagacaatcatgcatatgtttattcaaatcttcacacgaaaatttaaatttcaaaaccctaaatgccaatcaacttcatattta |
100 |
Q |
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| T |
26258428 |
cgtatcggaaccacatcagacaattatgcatatgtttattcaaatcttcacacgaaaatttaaatttcaaaaccctaaatgccaatcaacttcatattta |
26258527 |
T |
|
| Q |
101 |
ttnnnnnnnn-cttacttttaagagtctctcaactatgtaattcaatcacttccaaatctatactcacaaattaaagcaaaccaagacagcaatttatat |
199 |
Q |
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| T |
26258528 |
ttaaaaaaaaacttacttttaagagtctctcaactatgtaattcaatcacttccaaatctatactcacaaattaaagcaaaccaagacagcaatttatat |
26258627 |
T |
|
| Q |
200 |
agtggagtggcatggtgatgacactttatatagtttgtgaaaattaaaaattatttcacaccgcaataactgtaatgtgcatcggatgcaaccgcaacca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26258628 |
agtggagtggcatggtgatgacactttatatagtttgtgaaaattaaaaattatttcacaccgcaataactgtaatgtgcatcggatgcaaccgcaacca |
26258727 |
T |
|
| Q |
300 |
cgacaactgcaacttaaaaccatgcggtgcatataaattaaatctgaataagaacc |
355 |
Q |
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| T |
26258728 |
cgacaactgcaatttaaaaccatgcggtgcatataaattaaatctgaataagaacc |
26258783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 32520142 - 32520203
Alignment:
| Q |
209 |
gcatggtgatgacactttatatagtttgtgaaaattaaaaattatttcacaccgcaataact |
270 |
Q |
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| T |
32520142 |
gcatggtggtgtcactttatatagtttgtgaaaatttaaaattatttcacgccgcaacaact |
32520203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 29504030 - 29504092
Alignment:
| Q |
198 |
atagtggagtggcatggtgatgacactttatatagtttgtgaaaattaaaaattatttcacac |
260 |
Q |
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|||||| ||||||| |||| || ||||||||||||||||| |||||| ||||| ||||||||| |
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| T |
29504030 |
atagtgcagtggcacggtggtgccactttatatagtttgtaaaaatttaaaatcatttcacac |
29504092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 3975374 - 3975434
Alignment:
| Q |
198 |
atagtggagtggcatggtgatgacactttatatagtttgtgaaaattaaaaattatttcac |
258 |
Q |
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|||||| ||| | |||||| || |||||||||||||||||||||||| ||||| ||||||| |
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| T |
3975374 |
atagtgtagtagtatggtggtgtcactttatatagtttgtgaaaatttaaaatcatttcac |
3975434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 33492641 - 33492693
Alignment:
| Q |
223 |
ctttatatagtttgtgaaaattaaaaattatttcacaccgcaataactgtaat |
275 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| ||||| ||| ||||| |
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| T |
33492641 |
ctttatatagtttgtgaaaatttaaaattatttcacggcgcaacaacggtaat |
33492693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 44254887 - 44254923
Alignment:
| Q |
221 |
cactttatatagtttgtgaaaattaaaaattatttca |
257 |
Q |
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|||||||| || ||||||||||||||||||||||||| |
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| T |
44254887 |
cactttatctattttgtgaaaattaaaaattatttca |
44254923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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