View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0195-INSERTION-5 (Length: 595)
Name: NF0195-INSERTION-5
Description: NF0195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0195-INSERTION-5 |
 | |
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| [»] chr7 (11 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 84 - 595
Target Start/End: Complemental strand, 17005011 - 17004500
Alignment:
| Q |
84 |
aattcttgaggggattcaaagttcaaagaatacactgagctttgattataaggagacatgggcatcggtccatccatctcttctgctcgaacgcgacctt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17005011 |
aattcttgaggggattcaaagttcaaagaatacactgagctttgattttaaggagacacgggcatcggtccatccgtctcttctgctcgaacgcgacctt |
17004912 |
T |
|
| Q |
184 |
ttggaagaagaggagtctgttctctacaaggaccggctagagaagcttagattgaacccctacgcaggcgtcaaaacaaagtttttgttggagtttgtta |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17004911 |
ttggaagaagaggagtctgttctcgacaaggaccggctagagaagcttagattgaacccctacgcaggcgtcaaaacaaagtttttggtggagtttgtta |
17004812 |
T |
|
| Q |
284 |
gactttgtgctgctttaaatgagaaagttctcgtgttcagccaattcctcagtcctttacgcttaattatagagcagttattaaactcgtctttaaaatg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17004811 |
gactttgtgctgctttaaatgagaaagttctcgtgttcagccaattcctcagtcctttacgcttaattatagagcagttattaaactcgtctttaaaatg |
17004712 |
T |
|
| Q |
384 |
gacgatggagaaggaagtcctcttcatttctggagaggtaaaggacaggaagtccttaatcgataccttcaatgatgaaaacagtcaagcgaagattctc |
483 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17004711 |
gacgatggagaaggaagtcctcttcatttatggagaggtaaaggacaggaagtccttaatcgataccttcaatgatgaaaacagtcaagcgaagattctc |
17004612 |
T |
|
| Q |
484 |
cttgcaacgacaaaaacttgttccgagggaatcagcttggttggagcttcaagggttgtactactcgatgtcgtatggaatccctctgttgaaaaacagg |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17004611 |
cttgcaacgacaaaaacttgttccgagggaatcagcttggttggagcttcaagggttgtactactcgatgtcgtatggaatccctctgttgaaaaacagg |
17004512 |
T |
|
| Q |
584 |
caattagcagag |
595 |
Q |
| |
|
||||||| |||| |
|
|
| T |
17004511 |
caattagtagag |
17004500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 209 - 595
Target Start/End: Complemental strand, 16989337 - 16988954
Alignment:
| Q |
209 |
acaaggaccggctagagaagcttagattgaacccctacgcaggcgtcaaaacaaagtttttgttggagtttgttagactttgtgctgctttaaatgagaa |
308 |
Q |
| |
|
|||||||||| ||||| |||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
16989337 |
acaaggaccgtctagaaaagcttagattggaccacaatgcaggcgtcaaaacaaagtttttgttggagtttgttaatctttgtgctgctcacaatgagaa |
16989238 |
T |
|
| Q |
309 |
agttctcgtgttcagccaattcctcagtcctttacgcttaattatagagcagttattaaactcgtctttaaaatggacgatggagaaggaagtcctcttc |
408 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| |||||||| || ||||||||| || | |||||||| || ||||||| | |||| | |
|
|
| T |
16989237 |
agttctcgtgttcagccaattactcgatcctttacgcttgattatagacca---attaaactctgctcttaaatggaccgaggggaaggaaattctctac |
16989141 |
T |
|
| Q |
409 |
atttctggagaggtaaaggacaggaagtccttaatcgataccttcaatgatgaaaacagtcaagcgaagattctccttgcaacgacaaaaacttgttccg |
508 |
Q |
| |
|
|| ||||||||||| | ||||||| | ||||||||| ||| ||||||||||| |||||| ||| ||||||||||||||||| | || | | ||||||||| |
|
|
| T |
16989140 |
atgtctggagaggttagggacaggcaatccttaatcaataacttcaatgatgcaaacagccaatcgaagattctccttgcatcaacgagagcttgttccg |
16989041 |
T |
|
| Q |
509 |
agggaatcagcttggttggagcttcaagggttgtactactcgatgtcgtatggaatccctctgttgaaaaacaggcaattagcagag |
595 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| ||||||||||||| ||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
16989040 |
agggaatcagcttagttggagcttctagagttgtgctactcgatgtcgaatggaatccttcggttgaaaaacaggccatcagcagag |
16988954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 152 - 566
Target Start/End: Complemental strand, 16821154 - 16820734
Alignment:
| Q |
152 |
tccatccatctcttctgctcgaacgcgaccttttggaagaagaggagtctgttctctacaaggaccggctagagaagcttagattgaacccctacgcagg |
251 |
Q |
| |
|
||||||| | |||| | |||||| |||| |||||| |||||||||| |||||| || ||||||||| |||||| |||||| ||||||| || || | ||| |
|
|
| T |
16821154 |
tccatccgtatcttttcctcgaatgcgatcttttgaaagaagaggaatctgttgtcgacaaggaccagctagaaaagcttcgattgaatccatatgtagg |
16821055 |
T |
|
| Q |
252 |
cgtcaaaacaaagtttttgttggagtttgttagactttgtgctgctttaaatgagaaagttctcgtgttcagccaattcctcagtcctttacgcttaatt |
351 |
Q |
| |
|
|| ||||| || ||| || | ||||||||||||||||||| |||| | || ||||||||||| |||||||||||||| || |||| ||| ||||||| |
|
|
| T |
16821054 |
tgtgaaaaccaaatttctggttgagtttgttagactttgtgatgctgttaaagagaaagttcttgtgttcagccaattaatccgtcccttatgcttaatc |
16820955 |
T |
|
| Q |
352 |
atagagcagttattaaactcgtctttaaaatggacgatggagaaggaagtcctcttcatttctggagaggt------aaaggacaggaagtccttaatcg |
445 |
Q |
| |
|
||||| || |||| || |||||||| ||||| ||| ||||||| |||||||||| ||||||||| ||||||||| | ||||||||| |
|
|
| T |
16820954 |
atagaccaattatcgcacatttctttaaactggacagtggggaaggaaatcctcttcatgcatggagaggttagtctaaaggacagacaatccttaatcc |
16820855 |
T |
|
| Q |
446 |
ataccttcaatgatgaaaacagtcaagcgaagattctccttgcaacgacaaaaacttgttccgagggaatcagcttggttggagcttcaagggttgtact |
545 |
Q |
| |
|
||| ||||||||||| ||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||| ||||| || ||||| ||||||||||| || |
|
|
| T |
16820854 |
atagcttcaatgatgctaacagccaagcaaagatcctccttgcatcgacaaatgcttgttccgagggaattagcttagtcggagcatcaagggttgtgct |
16820755 |
T |
|
| Q |
546 |
actcgatgtcgtatggaatcc |
566 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
16820754 |
gctcgatgttgtatggaatcc |
16820734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 144 - 352
Target Start/End: Complemental strand, 16965189 - 16964981
Alignment:
| Q |
144 |
ggcatcggtccatccatctcttctgctcgaacgcgaccttttggaagaagaggagtctgttctctacaaggaccggctagagaagcttagattgaacccc |
243 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| || | ||||||||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| || |
|
|
| T |
16965189 |
ggcatctgtccatccatctcttttgctcgaatgcaaacttttggaagaagaggaatctgttctcgacaaggaccggctagaaaagcttcgattgaatcca |
16965090 |
T |
|
| Q |
244 |
tacgcaggcgtcaaaacaaagtttttgttggagtttgttagactttgtgctgctttaaatgagaaagttctcgtgttcagccaattcctcagtcctttac |
343 |
Q |
| |
|
| | ||| || ||||| || || ||| ||||||||||||| ||||||| |||| | || ||||| ||||| |||||||| |||| ||| ||||||||| |
|
|
| T |
16965089 |
aatggaggtgtgaaaaccaaattcttggtggagtttgttaggctttgtgatgctgttaacgagaaggttcttgtgttcagtgaattactcggtcctttac |
16964990 |
T |
|
| Q |
344 |
gcttaatta |
352 |
Q |
| |
|
||||||||| |
|
|
| T |
16964989 |
gcttaatta |
16964981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 17004401 - 17004310
Alignment:
| Q |
1 |
cggttgtctgaactagttttttcggctaaaaatgatgataataatgaggagttgaggagctgtgcagcgaacattgaagatagaattcttga |
92 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17004401 |
cggttatctgaactagttttttcggctaaaaatgacgataataatgaggagttgaggagctgtgcagcgaacattgaagatagaattcttga |
17004310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 440 - 566
Target Start/End: Complemental strand, 16964893 - 16964767
Alignment:
| Q |
440 |
taatcgataccttcaatgatgaaaacagtcaagcgaagattctccttgcaacgacaaaaacttgttccgagggaatcagcttggttggagcttcaagggt |
539 |
Q |
| |
|
||||| ||| |||||| |||| |||| | ||||| |||||||| |||||| |||||| | |||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
16964893 |
taatccatagcttcaacgatgcaaactgccaagcaaagattctacttgcatcgacaagagcttgttccgagggaattagcttagtcggagcatcaagggt |
16964794 |
T |
|
| Q |
540 |
tgtactactcgatgtcgtatggaatcc |
566 |
Q |
| |
|
||| || |||||||| ||||||||||| |
|
|
| T |
16964793 |
tgtgctgctcgatgttgtatggaatcc |
16964767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 450 - 566
Target Start/End: Complemental strand, 16973811 - 16973695
Alignment:
| Q |
450 |
cttcaatgatgaaaacagtcaagcgaagattctccttgcaacgacaaaaacttgttccgagggaatcagcttggttggagcttcaagggttgtactactc |
549 |
Q |
| |
|
|||||| |||||||| | ||||| ||| |||| |||||| | |||||| |||||||||||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
16973811 |
cttcaacgatgaaaattgccaagcaaaggttctacttgcatctacaaaagcttgttccgagggaattagcttagttggagcttcaagggttgtacttctg |
16973712 |
T |
|
| Q |
550 |
gatgtcgtatggaatcc |
566 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
16973711 |
gatgttgtgtggaatcc |
16973695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 16988855 - 16988764
Alignment:
| Q |
1 |
cggttgtctgaactagttttttcggctaaaaatgatgataataatgaggagttgaggagctgtgcagcgaacattgaagatagaattcttga |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| || | ||| || || |||||||||| |||||||||||||||||||||| |
|
|
| T |
16988855 |
cggttgtctgaactagttttttcggctaaaaatgccgataatcataatgagccgaagaactgtgcagcggacattgaagatagaattcttga |
16988764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 440 - 577
Target Start/End: Original strand, 10604747 - 10604884
Alignment:
| Q |
440 |
taatcgataccttcaatgatgaaaacagtcaagcgaagattctccttgcaacgacaaaaacttgttccgagggaatcagcttggttggagcttcaagggt |
539 |
Q |
| |
|
||||| ||| |||||| |||| ||| | ||||| ||| |||| |||||| | |||||| ||||||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
10604747 |
taatccatagcttcaacgatgcaaattgccaagcaaaggttctacttgcatctacaaaagcttgttctgagggaattagcttagttggagcttctagggt |
10604846 |
T |
|
| Q |
540 |
tgtactactcgatgtcgtatggaatccctctgttgaaa |
577 |
Q |
| |
|
|||||| || ||||| ||||||||||| ||||| |||| |
|
|
| T |
10604847 |
tgtacttctggatgttgtatggaatccttctgtcgaaa |
10604884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 181 - 331
Target Start/End: Original strand, 10604485 - 10604635
Alignment:
| Q |
181 |
cttttggaagaagaggagtctgttctctacaaggaccggctagagaagcttagattgaacccctacgcaggcgtcaaaacaaagtttttgttggagtttg |
280 |
Q |
| |
|
|||| ||||||||| || |||| ||| ||||||| | ||| || ||||||||| ||||||| | | ||| ||||||||||| |||||||| ||||||| |
|
|
| T |
10604485 |
ctttcggaagaagaagaatctgctcttgacaaggatcagctggaaaagcttagactgaacccacatgaaggtgtcaaaacaaaatttttgttcgagtttg |
10604584 |
T |
|
| Q |
281 |
ttagactttgtgctgctttaaatgagaaagttctcgtgttcagccaattcc |
331 |
Q |
| |
|
|| | || || | |||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
10604585 |
ttcggctatgcgatgcttttcacgagaaagttcttgtgttcagccaattcc |
10604635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 16974011 - 16973933
Alignment:
| Q |
253 |
gtcaaaacaaagtttttgttggagtttgttagactttgtgctgctttaaatgagaaagttctcgtgttcagccaattcc |
331 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || |||| |||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
16974011 |
gtcaaaacaaaatttttgttcaagtttgttcggctatgtgatgcttttcacgagaaagttcttgtgttcagccaattcc |
16973933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 199 - 577
Target Start/End: Complemental strand, 35924887 - 35924506
Alignment:
| Q |
199 |
tctgttctctacaaggaccggctagagaagcttagattgaacccctacgcaggcgtcaaaacaaagtttttgttggagtttgttagactttgtgctgctt |
298 |
Q |
| |
|
|||| |||| ||||||| | ||| || ||||||||| ||||||| | | ||| ||||||||||| |||||||| |||||||| | || |||| ||||| |
|
|
| T |
35924887 |
tctgctctcgacaaggatcagctggaaaagcttagactgaacccacatgaaggtgtcaaaacaaaatttttgttctagtttgttcggctatgtgatgctt |
35924788 |
T |
|
| Q |
299 |
taaatgagaaagttctcgtgttcagccaattcctcagtcctttacgcttaattatagagcagttattaaactcgtctttaaaatggac-gatggagaagg |
397 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||||||| |||| |||| || || ||| |||| |
|
|
| T |
35924787 |
ttcacgagaaagttcttgtgttcagccaattccttgctcctttacatttaattatagacca---attaaactctgcttttaaatttactgaggga-aagg |
35924692 |
T |
|
| Q |
398 |
aagtcctcttcatttctggagaggt------aaaggacaggaagtccttaatcgataccttcaatgatgaaaacagtcaagcgaagattctccttgcaac |
491 |
Q |
| |
|
|||| || |||| ||||| |||| ||||| || | | ||| ||||| | | ||| || |||||||| | ||| | ||| |||| |||||| | |
|
|
| T |
35924691 |
aagtgctggtcatgtctggcgaggatcctccaaaggtcaagcaatccgtaatccacagctttaacgatgaaaattgccaaacaaaggttctacttgcatc |
35924592 |
T |
|
| Q |
492 |
gacaaaaacttgttccgagggaatcagcttggttggagcttcaagggttgtactactcgatgtcgtatggaatccctctgttgaaa |
577 |
Q |
| |
|
|||||| ||||||| |||||||| ||||| |||||||||||||||||||| || || ||||| ||||||||||| |||||||||| |
|
|
| T |
35924591 |
tacaaaagcttgttctgagggaattagcttagttggagcttcaagggttgttcttctggatgttgtatggaatccttctgttgaaa |
35924506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 566
Target Start/End: Original strand, 35266299 - 35266381
Alignment:
| Q |
484 |
cttgcaacgacaaaaacttgttccgagggaatcagcttggttggagcttcaagggttgtactactcgatgtcgtatggaatcc |
566 |
Q |
| |
|
|||||| | |||||| ||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
35266299 |
cttgcatctacaaaagcttgttctgagggaattagcttagttggagcttcaagggttgtacttctggatgttgtatggaatcc |
35266381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 35266065 - 35266143
Alignment:
| Q |
253 |
gtcaaaacaaagtttttgttggagtttgttagactttgtgctgctttaaatgagaaagttctcgtgttcagccaattcc |
331 |
Q |
| |
|
||||||||||| |||||||| ||||||||| | || |||| |||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
35266065 |
gtcaaaacaaaatttttgttcgagtttgttcggctatgtgatgcttttcacgagaaagttcttgtgttcagccaattcc |
35266143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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