View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0195-INSERTION-7 (Length: 608)
Name: NF0195-INSERTION-7
Description: NF0195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0195-INSERTION-7 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 7746124 - 7746466
Alignment:
| Q |
8 |
agttgtacattaaagaaagcaacagtttcagtaaaattgatttataaacaattatacttaaatgaaatcatatttagtaaaaaatataagcaaatataga |
107 |
Q |
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| T |
7746124 |
agttgtacattaaagaaagcaacagtttcagtaaaattgatttataaacaattatacttaaatgaaatcatatttagtaaaaaatataagcaaatataga |
7746223 |
T |
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| Q |
108 |
agtttcatatgctctatacaactatactcctcaatagacatttacaatcaggaagctgacaaaatgaatgaaccatattcgataaaattgtgcaggaatt |
207 |
Q |
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| T |
7746224 |
agtttcatatgctctatacaactatactcctcaatagacatttacaatcaggaagctgacaaaatgaatgaaccatattcgataaaattgtgcaggaatt |
7746323 |
T |
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| Q |
208 |
ttatagcctactaaattggttgatactaacatcattaactcgctcaaatccaataagccctctaattgagtgacgagtgtgctaaatgtgttccgtctgg |
307 |
Q |
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| T |
7746324 |
ttatagcctactaaattggttgatactaacatcattaactcactcaaatccaataagccctctaattgagtgacgagtgtgctaaatgtgttccgtctgg |
7746423 |
T |
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| Q |
308 |
aagaataaaaaaggcagataaaggactcgaatacacaaaattc |
350 |
Q |
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| T |
7746424 |
aagaataaaaaaggcagataaaggactcgaatacacaaaattc |
7746466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 346 - 608
Target Start/End: Original strand, 7745867 - 7746129
Alignment:
| Q |
346 |
aattcaccaaaattccctttgacaacaaagtggtacgtcaatcagaaaattgaaaaacaaggatatacaaaactggaaaccaaatttaaacagaggtagc |
445 |
Q |
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| T |
7745867 |
aattcaccaaaattccctttgacaacaaagtggtacgtcaatcagaaaattgaaaaacaaggatatacaaaactggaaaccaaatttaaacagaggtagc |
7745966 |
T |
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| Q |
446 |
tgttgcattcttaggttcataaagtaagctagtgcttgatctttaacttatgaatacatgcgcatcaaagtaaaagtattctatttcaaaaaataaatag |
545 |
Q |
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| T |
7745967 |
tgttgcattcttaggttcataaagtaagctagtgcttgatctttaacttatgaatacatgtgcatcaaagtaaaagtattctatttcaaaaaataaatag |
7746066 |
T |
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| Q |
546 |
atagtacaatagaaatcagtaactagaaatgagtcaagagttatatctcctaatcttagttgt |
608 |
Q |
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| T |
7746067 |
ataatacaatagacatcagtaactagaaatgagtcaagagttatatctcctaatcttagttgt |
7746129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 8573412 - 8573352
Alignment:
| Q |
219 |
taaattggttgatactaacatcattaactcgctcaaatccaataagccctctaattgagtg |
279 |
Q |
| |
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| T |
8573412 |
taaattggttgaaacatacctcattcactcactcaaatccaataagccttctaattgagtg |
8573352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 397 - 599
Target Start/End: Original strand, 17793314 - 17793543
Alignment:
| Q |
397 |
gaaaaacaaggatatacaaaa-ctggaaaccaaatttaaacagaggtagctgttgcattcttaggttcataaagtaag--------------ctagtgct |
481 |
Q |
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| T |
17793314 |
gaaaaacaaggatatgcaaaaactgaaaaccaaatttaaatagaggttgttgttgcattcttaggttcataaagtaagtcagtgcttgatctctagtgtt |
17793413 |
T |
|
| Q |
482 |
tgatctttaacttatgaatacatgcgcatcaaagta------------aaagtattctatttcaaaaaataaatagatagtacaatagaaatcagtaact |
569 |
Q |
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| T |
17793414 |
tgatctctaacttatgaatacatgtgcatcaaagtataagtgaacacaaaagtattctatttcaaaaaataaatacatggtacaatagacattagtaact |
17793513 |
T |
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| Q |
570 |
agaaatgagtcaagagttatatctcctaat |
599 |
Q |
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| T |
17793514 |
agaaatgagtcaagagttatatctcctaat |
17793543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 17793549 - 17793663
Alignment:
| Q |
10 |
ttgtacattaaagaaagcaacagtttcagtaaaattgatttataaacaattatacttaaatgaaatcatatttagtaaaaaatataagcaaatatagaag |
109 |
Q |
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| T |
17793549 |
ttgtacattaaagaaagcaacatttaaggtaaaattgatttataaacaactaaacttaaatgaaaacagattt-ctccaaaatataaacaaatatagaag |
17793647 |
T |
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| Q |
110 |
tttcatatgctctata |
125 |
Q |
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| T |
17793648 |
tttcttatgctctata |
17793663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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