View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0195-INSERTION-8 (Length: 465)
Name: NF0195-INSERTION-8
Description: NF0195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0195-INSERTION-8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 203 - 465
Target Start/End: Original strand, 7745866 - 7746128
Alignment:
| Q |
203 |
gaattcaccaaaattccctttgacaacaaagtggtacgtcaatcagaaaattgaaaaacaaggatatacaaaactggaaaccaaatttaaacagaggtag |
302 |
Q |
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| T |
7745866 |
gaattcaccaaaattccctttgacaacaaagtggtacgtcaatcagaaaattgaaaaacaaggatatacaaaactggaaaccaaatttaaacagaggtag |
7745965 |
T |
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| Q |
303 |
ctgttgcattcttaggttcataaagtaagctagtgcttgatctttaacttatgaatacatgtgcatcaaagtaaaagtattctatttcaaaaaataaata |
402 |
Q |
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| T |
7745966 |
ctgttgcattcttaggttcataaagtaagctagtgcttgatctttaacttatgaatacatgtgcatcaaagtaaaagtattctatttcaaaaaataaata |
7746065 |
T |
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| Q |
403 |
gatagtacaatagaaatcagtaactagaaatgagtcaagagttatatctcctaatcttagttg |
465 |
Q |
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| T |
7746066 |
gataatacaatagacatcagtaactagaaatgagtcaagagttatatctcctaatcttagttg |
7746128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 7746124 - 7746323
Alignment:
| Q |
8 |
agttgtacattaaagaaagcaacagtttcagtaaaattgatttataaacaattatacttaaatgaaatcatatttagtaaaaaatataagcaaatataga |
107 |
Q |
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| T |
7746124 |
agttgtacattaaagaaagcaacagtttcagtaaaattgatttataaacaattatacttaaatgaaatcatatttagtaaaaaatataagcaaatataga |
7746223 |
T |
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| Q |
108 |
agtttcatatgctctatacaactatactcctcaatagacatttacaatcaggaagctgacaaaatgaatgaaccatattcgataaaattgtgcaggaatt |
207 |
Q |
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| T |
7746224 |
agtttcatatgctctatacaactatactcctcaatagacatttacaatcaggaagctgacaaaatgaatgaaccatattcgataaaattgtgcaggaatt |
7746323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 255 - 457
Target Start/End: Original strand, 17793314 - 17793543
Alignment:
| Q |
255 |
gaaaaacaaggatatacaaaa-ctggaaaccaaatttaaacagaggtagctgttgcattcttaggttcataaagtaag--------------ctagtgct |
339 |
Q |
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| T |
17793314 |
gaaaaacaaggatatgcaaaaactgaaaaccaaatttaaatagaggttgttgttgcattcttaggttcataaagtaagtcagtgcttgatctctagtgtt |
17793413 |
T |
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| Q |
340 |
tgatctttaacttatgaatacatgtgcatcaaagta------------aaagtattctatttcaaaaaataaatagatagtacaatagaaatcagtaact |
427 |
Q |
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| T |
17793414 |
tgatctctaacttatgaatacatgtgcatcaaagtataagtgaacacaaaagtattctatttcaaaaaataaatacatggtacaatagacattagtaact |
17793513 |
T |
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| Q |
428 |
agaaatgagtcaagagttatatctcctaat |
457 |
Q |
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| T |
17793514 |
agaaatgagtcaagagttatatctcctaat |
17793543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 17793549 - 17793663
Alignment:
| Q |
10 |
ttgtacattaaagaaagcaacagtttcagtaaaattgatttataaacaattatacttaaatgaaatcatatttagtaaaaaatataagcaaatatagaag |
109 |
Q |
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| T |
17793549 |
ttgtacattaaagaaagcaacatttaaggtaaaattgatttataaacaactaaacttaaatgaaaacagattt-ctccaaaatataaacaaatatagaag |
17793647 |
T |
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| Q |
110 |
tttcatatgctctata |
125 |
Q |
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| T |
17793648 |
tttcttatgctctata |
17793663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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