View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0196-INSERTION4 (Length: 562)

Name: NF0196-INSERTION4
Description: NF0196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0196-INSERTION4
NF0196-INSERTION4
[»] chr4 (3 HSPs)
chr4 (27-348)||(43218068-43218384)
chr4 (346-562)||(43217821-43218036)
chr4 (361-431)||(13501077-13501147)
[»] chr5 (5 HSPs)
chr5 (363-434)||(19088920-19088990)
chr5 (363-426)||(18729707-18729771)
chr5 (364-430)||(14044426-14044491)
chr5 (365-434)||(16969481-16969550)
chr5 (390-430)||(10205478-10205518)
[»] chr8 (2 HSPs)
chr8 (368-430)||(2031327-2031389)
chr8 (364-430)||(26878657-26878723)
[»] chr3 (1 HSPs)
chr3 (364-434)||(31474530-31474599)
[»] scaffold0121 (1 HSPs)
scaffold0121 (363-430)||(24170-24237)
[»] chr7 (1 HSPs)
chr7 (359-402)||(26828385-26828428)
[»] chr6 (1 HSPs)
chr6 (361-432)||(3924988-3925059)
[»] chr2 (6 HSPs)
chr2 (363-430)||(28733934-28734001)
chr2 (363-421)||(1246339-1246397)
chr2 (364-430)||(1604243-1604308)
chr2 (359-424)||(14287608-14287671)
chr2 (363-404)||(26512221-26512262)
chr2 (378-434)||(45214832-45214888)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 9e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 27 - 348
Target Start/End: Complemental strand, 43218384 - 43218068
Alignment:
Q  27 aagaccctttgctcagtttgtatatcactataaataaattactctatatataaatgattttaatgtgtttgatttttcacgttctcactaaattggtact 126  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43218384 aagaccctttgctcaatttgtatatcactataaataaattactctatatataaatgattttaatgtg-ttgatttttcacgttctcactaaattggtact 43218286  T
Q  127 ccctccctcattaacaatatgcnnnnnnnntaaatcaattttcatagttaagaaatgacattaagtgtatttaatttccnnnnnnnnnnnnnnnngtctg 226  Q
    ||||| ||||||||||||||||        ||||||| ||||||||||||| ||||||| |||||||||||||||||||                ||||     
T  43218285 ccctcactcattaacaatatgcaaaaaaaataaatcatttttcatagttaa-aaatgacgttaagtgtatttaatttcc---tttttttttttttgtctt 43218190  T
Q  227 acttttcttgtatttgcggatcaccaaagctaaagagctaattttcaaccaaacaacttttataaaaacagacgaatccatttaatacttggcttcatgt 326  Q
    ||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||||||||||    
T  43218189 actcttcttgtatttgcggatcaccaaagttaaggagctaattttcaaccaaacaacttttagaaaaacagacgagtgcatttaataattggcttcatgt 43218090  T
Q  327 aaaaataaatacatttactaat 348  Q
    ||||| ||||| ||||||||||    
T  43218089 aaaaacaaatatatttactaat 43218068  T

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Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 346 - 562
Target Start/End: Complemental strand, 43218036 - 43217821
Alignment:
Q  346 aatataaagtctctatacaaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaaatatactgtta 445  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  43218036 aatataaagtctctatgcaaattaatagatgtatttattattcattttctaaacataccacttattaatactattaatttatcttaaaaatatattgtta 43217937  T
Q  446 ttagcttcttcaacaacaaaaatacgcagttatcattagttaaaggaagacttggnnnnnnngtgaatgtcacgttggaaaaacaatcatgattcttttg 545  Q
    ||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  43217936 ttaacttcttcaacaa-aaaaatacgtagttatcattagtcaaaggaagacttggaaaaaaagtgaatgtcacgttggaaaaacaatcatgattcttttg 43217838  T
Q  546 gaacgaaatattgatgg 562  Q
    |||||||||||||||||    
T  43217837 gaacgaaatattgatgg 43217821  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 13501077 - 13501147
Alignment:
Q  361 tacaaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatctta 431  Q
    |||||||| ||||||| ||||||||||| ||||  ||| ||||   ||||||||||||| |||||||||||    
T  13501077 tacaaattgttaaatgcatttattattcttttttcaaatatactctttattaatactatcaatttatctta 13501147  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 363 - 434
Target Start/End: Original strand, 19088920 - 19088990
Alignment:
Q  363 caaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 434  Q
    |||||||||||| ||| ||||||||  ||||||||||| ||| || ||||||||||||||||||| ||||||    
T  19088920 caaattattaaaagtaattattattt-ttttctaaacaaacccctgattaatactattaatttattttaaaa 19088990  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 18729771 - 18729707
Alignment:
Q  363 caaattattaaatgtatttattattcattttc-taaacataccgcttattaatactattaattta 426  Q
    |||||||||| ||| ||||||||||  ||||| |||||||||| || ||||||||||||||||||    
T  18729771 caaattattagatgcatttattattatttttcctaaacatacccctaattaatactattaattta 18729707  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 14044426 - 14044491
Alignment:
Q  364 aaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 430  Q
    |||||||||||||||||||||||| |||||||||| ||| | || |||||||||  ||| |||||||    
T  14044426 aaattattaaatgtatttattatt-attttctaaatatatccctaattaatactgctaacttatctt 14044491  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 434
Target Start/End: Complemental strand, 16969550 - 16969481
Alignment:
Q  365 aattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 434  Q
    ||||| |||||| ||||||||||  ||||||||||||||| || ||||||| || ||| || ||||||||    
T  16969550 aattactaaatgcatttattattatttttctaaacatacctctaattaatattactaaattgtcttaaaa 16969481  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 430
Target Start/End: Complemental strand, 10205518 - 10205478
Alignment:
Q  390 ttttctaaacataccgcttattaatactattaatttatctt 430  Q
    ||||| ||||||||| ||||||||||||| |||||||||||    
T  10205518 ttttccaaacataccccttattaatactactaatttatctt 10205478  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 2031389 - 2031327
Alignment:
Q  368 tattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 430  Q
    ||||| ||||||||||||||| |||  |||||||||| || |||||||||| |||||||||||    
T  2031389 tattagatgtatttattattcttttcttaaacatacctctaattaatactactaatttatctt 2031327  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 26878657 - 26878723
Alignment:
Q  364 aaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 430  Q
    |||||| || ||||||||||||||  ||| ||||||||||| || |||||||||| ||| |||||||    
T  26878657 aaattactagatgtatttattatttttttcctaaacatacccctaattaatactactaacttatctt 26878723  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 31474599 - 31474530
Alignment:
Q  364 aaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 434  Q
    ||||||||| ||||||||||||||  ||| ||||||||||| || |||||||||| |||||| ||||||||    
T  31474599 aaattattagatgtatttattattt-tttcctaaacatacccctaattaatactactaatttgtcttaaaa 31474530  T

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Target: scaffold0121 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 430
Target Start/End: Complemental strand, 24237 - 24170
Alignment:
Q  363 caaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 430  Q
    ||||||| || ||| ||||| ||||  ||||||||||||||| || |||||||||||||| |||||||    
T  24237 caaattactagatgcatttactattttttttctaaacatacccctaattaatactattaacttatctt 24170  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 402
Target Start/End: Original strand, 26828385 - 26828428
Alignment:
Q  359 tatacaaattattaaatgtatttattattcattttctaaacata 402  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||    
T  26828385 tatacaaattattagatgtatttattattcttttcctaaacata 26828428  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 432
Target Start/End: Complemental strand, 3925059 - 3924988
Alignment:
Q  361 tacaaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaa 432  Q
    |||||||| |||||||||||||||| || ||||||||| ||| | || ||||||| | | ||||||||||||    
T  3925059 tacaaatttttaaatgtatttattactctttttctaaatatatccctaattaatattgtcaatttatcttaa 3924988  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 430
Target Start/End: Complemental strand, 28734001 - 28733934
Alignment:
Q  363 caaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 430  Q
    ||||||| || ||| ||||||||||  ||| ||||||||||| || |||||||||| |||||||||||    
T  28734001 caaattactatatgcatttattattgttttcctaaacatacccctaattaatactactaatttatctt 28733934  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 1246339 - 1246397
Alignment:
Q  363 caaattattaaatgtatttattattcattttctaaacataccgcttattaatactatta 421  Q
    ||||||| |||||  ||||||||||  ||||||||||||||| || |||||||||||||    
T  1246339 caaattactaaatacatttattattatttttctaaacatacccctaattaatactatta 1246397  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 430
Target Start/End: Original strand, 1604243 - 1604308
Alignment:
Q  364 aaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 430  Q
    ||||||||| |||||||||||||| |||||||||||||||| || |||| | ||| |||||| ||||    
T  1604243 aaattattagatgtatttattatt-attttctaaacatacctctaattattcctactaatttgtctt 1604308  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 14287671 - 14287608
Alignment:
Q  359 tatacaaattattaaatgtatttattattcattttctaaacataccgcttattaatactattaatt 424  Q
    |||||||||||||| ||||| ||||| ||  ||||||||||||||| || ||||||| ||||||||    
T  14287671 tatacaaattattagatgtaattattttt--ttttctaaacatacccctaattaatattattaatt 14287608  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 26512262 - 26512221
Alignment:
Q  363 caaattattaaatgtatttattattcattttctaaacatacc 404  Q
    |||||||||| ||||||||||||||  |||||||||||||||    
T  26512262 caaattattagatgtatttattattatttttctaaacatacc 26512221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 434
Target Start/End: Complemental strand, 45214888 - 45214832
Alignment:
Q  378 atttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 434  Q
    ||||||||||  |||  |||||||||| || |||||||||| |||||||||||||||    
T  45214888 atttattatttttttcttaaacatacccctaattaatactactaatttatcttaaaa 45214832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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