View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0196-INSERTION5 (Length: 674)
Name: NF0196-INSERTION5
Description: NF0196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0196-INSERTION5 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 59 - 506
Target Start/End: Original strand, 47620211 - 47620658
Alignment:
| Q |
59 |
ctccaacaattgtaggactaaaatagcaggagtcaattctgcagacnnnnnnnnngttttgaaacagtcaatattattcacttcgaatgagtgcaaggcg |
158 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47620211 |
ctccaacaattgtaggactaaagcagcaggagtcaattctgcagactttttttttgttttgaaacagccaatattattcacttcgaatgagtgcaaggcg |
47620310 |
T |
|
| Q |
159 |
cacaaaagacattcgtggacaagccaataaggcaacaaacacacgttgccgtatatgggcggaacaccggagaaaataaaacacaaaccaaaggaacccc |
258 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47620311 |
cacaaaagacattcgcggacaagccaataaggcaacaaacacacgttgccgtatatgggcggaacaccggagaaaataaaacacaaaccaaaggaacccc |
47620410 |
T |
|
| Q |
259 |
ataaacaagagactagccaatactaaagcatgatgccaaggtatacacaagacccctaaccaaaaacaatgatgcaacataaaggtcaatacatgaatac |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47620411 |
ataaacaagagactagccaatactaaagcatgatgccaaggtatacacaagacccctaaccaaaaacaatgatgcaacataaaggtcaacacatgaatac |
47620510 |
T |
|
| Q |
359 |
tcccacatcacagccctccactaacagtacaaaattatagattcagcaccagaaaaacatcagaggcaataggaaaaggcagaacagctgctattcaaac |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |
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| T |
47620511 |
tcccacatcacagccctccactaacagtacaaaattatagattcagcaccagaaaaacatcagaggcaagaggaaaagacagagcagctgctattcaaac |
47620610 |
T |
|
| Q |
459 |
acctcaatgttctaaaaacagcacaaacacaaattcagtccactattc |
506 |
Q |
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| T |
47620611 |
acctcaatgttctaaaaacagcacaaacacaaattcagtccactattc |
47620658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 564 - 674
Target Start/End: Original strand, 47620716 - 47620826
Alignment:
| Q |
564 |
caagacaaaaacttatacaaatacttcaccaaaccataagtatgctatatacaatacaatacgaaaaatattataaagacggcgaaagagtagagtttgg |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |
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| T |
47620716 |
caagacaaaaacttatacaaatacttcaccaaaccataagtatgctatatacaatacaaagccaaaaatattataaagacagcgaaagagtagagtttgg |
47620815 |
T |
|
| Q |
664 |
ggacatggttc |
674 |
Q |
| |
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||||||||||| |
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| T |
47620816 |
ggacatggttc |
47620826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 485
Target Start/End: Complemental strand, 43598740 - 43598700
Alignment:
| Q |
445 |
gctgctattcaaacacctcaatgttctaaaaacagcacaaa |
485 |
Q |
| |
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| T |
43598740 |
gctgctattcaaacacctcaatggcctaaaaacagcacaaa |
43598700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 127 - 376
Target Start/End: Original strand, 31198687 - 31198936
Alignment:
| Q |
127 |
caatattattcacttcgaatgagtgcaaggcgcacaaaagacattcgtggacaa-gccaataaggcaacaaacacacgttgccgtatatgggcggaaca- |
224 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| | | || ||||| ||||| || |
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|
| T |
31198687 |
caatattatttacgacgaatgagtgcaaggcgcacaaaaaacattcgcagacaaagccctgaaggcaacaaacaccaggtaccatatatatgcggatcat |
31198786 |
T |
|
| Q |
225 |
ccggagaaaata-aaacacaaaccaaa-ggaaccccataaacaagagactagccaatactaaagcatgatgccaaggtatacacaagacccctaaccaaa |
322 |
Q |
| |
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||| | |||||| ||||| | ||||| ||||||| ||||||||||||||| || | | ||||||||||||||||||||||| |||||| || ||| || |
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| T |
31198787 |
ccgaaaaaaatacaaacaaattccaaaaggaaccctataaacaagagactaacccaatcaaaagcatgatgccaaggtatacataagacctctcacc-aa |
31198885 |
T |
|
| Q |
323 |
aacaatgatgcaacataaaggtcaatacatgaatactcccacatcacagccctc |
376 |
Q |
| |
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|||| || ||||| || | |||| || |||||||||||||||||||||||| |
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| T |
31198886 |
aaca---atacaacaaaaggatcaacccacgaatactcccacatcacagccctc |
31198936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 35708187 - 35708144
Alignment:
| Q |
142 |
cgaatgagtgcaaggcgcacaaaagacattcgtggacaagccaa |
185 |
Q |
| |
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|||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
35708187 |
cgaatgggtgcaagacgcacaaaaaacattcgtggacaagccaa |
35708144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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