View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0196_low_3 (Length: 205)
Name: NF0196_low_3
Description: NF0196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0196_low_3 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31289 - 31181
Alignment:
| Q |
1 |
accatgactacaggggtgatgtagaggctcaattgagcccattccttagacaaattgatagtaggtggctttgtttaaggtctttcattgtagattcagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31289 |
accatgactacaggggtgatgtagaggctcaattgagcccattccttagacaaattgatagtaggtggctttgtttaaggtctttcattgtagattcagg |
31190 |
T |
|
| Q |
101 |
tatattctt |
109 |
Q |
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||| ||||| |
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| T |
31189 |
tattttctt |
31181 |
T |
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