View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0197AE1 (Length: 643)

Name: NF0197AE1
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0197AE1
NF0197AE1
[»] chr2 (4 HSPs)
chr2 (512-643)||(40051275-40051406)
chr2 (266-412)||(40051507-40051653)
chr2 (358-405)||(40051466-40051513)
chr2 (514-566)||(42427712-42427764)
[»] chr8 (8 HSPs)
chr8 (535-573)||(31820842-31820880)
chr8 (514-566)||(2273225-2273277)
chr8 (530-573)||(36886292-36886335)
chr8 (516-573)||(35754587-35754644)
chr8 (514-566)||(37161720-37161772)
chr8 (514-566)||(37465900-37465952)
chr8 (514-566)||(38502399-38502451)
chr8 (587-643)||(43460640-43460696)
[»] chr5 (5 HSPs)
chr5 (586-642)||(33654890-33654946)
chr5 (517-566)||(13091131-13091180)
chr5 (514-566)||(3056600-3056652)
chr5 (582-642)||(13795333-13795393)
chr5 (514-566)||(17465491-17465543)
[»] chr4 (5 HSPs)
chr4 (514-566)||(36091273-36091325)
chr4 (514-566)||(27539131-27539183)
chr4 (514-573)||(37519095-37519155)
chr4 (514-573)||(37523311-37523371)
chr4 (514-566)||(52589286-52589338)
[»] chr3 (8 HSPs)
chr3 (514-566)||(7672016-7672068)
chr3 (582-642)||(788534-788594)
chr3 (514-566)||(3082320-3082372)
chr3 (514-566)||(19547704-19547756)
chr3 (514-566)||(35171332-35171384)
chr3 (514-566)||(40650282-40650334)
chr3 (587-643)||(41902239-41902295)
chr3 (514-566)||(42848345-42848397)
[»] chr7 (4 HSPs)
chr7 (586-642)||(20438877-20438933)
chr7 (587-643)||(24203157-24203213)
chr7 (514-566)||(30863005-30863057)
chr7 (514-566)||(42711146-42711198)
[»] chr6 (4 HSPs)
chr6 (514-566)||(1096429-1096481)
chr6 (514-566)||(4110766-4110818)
chr6 (514-573)||(6848725-6848785)
chr6 (514-566)||(26358692-26358744)
[»] chr1 (1 HSPs)
chr1 (514-566)||(45423825-45423877)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 512 - 643
Target Start/End: Complemental strand, 40051406 - 40051275
Alignment:
Q  512 ccataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgtttttcttataatactcctctttcttaaaatataaaagttcacaaatcgc 611  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40051406 ccataaaatgtaaaatgtttagcataatttttataaacaatgaaatgatgtttttcttataacactcctctttcttaaaatataaaagttcacaaatcgc 40051307  T
Q  612 tctttattccataaaaataatcgttagtttat 643  Q
    |||||||||||||||||||||||||| |||||    
T  40051306 tctttattccataaaaataatcgttaatttat 40051275  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 266 - 412
Target Start/End: Complemental strand, 40051653 - 40051507
Alignment:
Q  266 ttaatgtaggctcatgtttaaaatacaatgttaacatatatcatttagagccctttattctgcttttttnnnnnnnnnnnnnnnnnncaattgtagaagt 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                  |||||||||||||    
T  40051653 ttaatgtaggctcatgtttaaaatacaatgttaacatatatcatttagagccctttattttgcttttttaaaataaaattaaaaaaacaattgtagaagt 40051554  T
Q  366 tttgactcctttgttatagattttaaagaaaatttataaagtagaag 412  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  40051553 tttgactcttttgttatagattttaaagaaaatttataaagtagaag 40051507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 405
Target Start/End: Complemental strand, 40051513 - 40051466
Alignment:
Q  358 gtagaagttttgactcctttgttatagattttaaagaaaatttataaa 405  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  40051513 gtagaagttttgattcctttgttatagattttaaacaaaatttataaa 40051466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 42427764 - 42427712
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  42427764 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 42427712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 573
Target Start/End: Complemental strand, 31820880 - 31820842
Alignment:
Q  535 atgatttttataaacattgagatgatgtttttcttataa 573  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  31820880 atgatttttataaacattgaaatgatgtttttcttataa 31820842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 2273225 - 2273277
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||||| ||| |||||||||||    
T  2273225 ataaaatgtaaaaaaattagtatgatttttataaacaatgaaatgatgttttt 2273277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 573
Target Start/End: Complemental strand, 36886335 - 36886292
Alignment:
Q  530 ttagcatgatttttataaacattgagatgatgtttttcttataa 573  Q
    |||| |||||||||||||||| ||| ||||||||||||||||||    
T  36886335 ttagtatgatttttataaacaatgaaatgatgtttttcttataa 36886292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 35754644 - 35754587
Alignment:
Q  516 aaaatgtaaaaagtttagcatgatttttataaacattgagatgatgtttttcttataa 573  Q
    ||||||| |||| ||||  || ||||||||||||| ||| ||||||||||||||||||    
T  35754644 aaaatgttaaaaatttaatataatttttataaacaatgaaatgatgtttttcttataa 35754587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 37161720 - 37161772
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  37161720 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 37161772  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 37465900 - 37465952
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||||| ||| |||| ||||||    
T  37465900 ataaaatgtaaaaaaattagtatgatttttataaacaatgaaatgaggttttt 37465952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 38502399 - 38502451
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  38502399 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 38502451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 643
Target Start/End: Original strand, 43460640 - 43460696
Alignment:
Q  587 taaaatataaaagttcacaaatcgctctttattccataaaaataatcgttagtttat 643  Q
    ||||||||||||||  |||||| ||||||| || ||||||||| |||||||| ||||    
T  43460640 taaaatataaaagtcgacaaatagctcttttttacataaaaatgatcgttagcttat 43460696  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 642
Target Start/End: Complemental strand, 33654946 - 33654890
Alignment:
Q  586 ttaaaatataaaagttcacaaatcgctctttattccataaaaataatcgttagttta 642  Q
    |||||||||||||||  ||||||  ||||||||| ||||||||||||||||| ||||    
T  33654946 ttaaaatataaaagtcaacaaataactctttatttcataaaaataatcgttaattta 33654890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 13091131 - 13091180
Alignment:
Q  517 aaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    |||||||||||  |||| |||||||||||||||| ||| |||||||||||    
T  13091131 aaatgtaaaaaaattagtatgatttttataaacaatgaaatgatgttttt 13091180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 3056600 - 3056652
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  3056600 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 3056652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 642
Target Start/End: Complemental strand, 13795393 - 13795333
Alignment:
Q  582 tttcttaaaatataaaagttcacaaatcgctctttattccataaaaataatcgttagttta 642  Q
    |||| |||||||||||  |  |||||| ||||||||||||||||||||||| |||| ||||    
T  13795393 tttcctaaaatataaatatcaacaaatagctctttattccataaaaataatagttaattta 13795333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 17465543 - 17465491
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    |||||||||||||| | ||| |||||||||||||||| ||| |||||| ||||    
T  17465543 ataaaatgtaaaaattatagtatgatttttataaacaatgaaatgatgatttt 17465491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 36091273 - 36091325
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||||| ||| |||||||||||    
T  36091273 ataaaatgtaaaaaaattagtatgatttttataaacaatgaaatgatgttttt 36091325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 27539131 - 27539183
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  27539131 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 27539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 573
Target Start/End: Complemental strand, 37519155 - 37519095
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttt-ttcttataa 573  Q
    ||||||||||||||  |||| |||||||||||||| | ||| ||||||||| |||||||||    
T  37519155 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgtttcttcttataa 37519095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 573
Target Start/End: Complemental strand, 37523371 - 37523311
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttt-ttcttataa 573  Q
    ||||||||||||||  |||| |||||||||||||| | ||| ||||||||| |||||||||    
T  37523371 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgtttcttcttataa 37523311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 52589286 - 52589338
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  52589286 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 52589338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 7672016 - 7672068
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||||| ||| |||||||||||    
T  7672016 ataaaatgtaaaaaaattagtatgatttttataaacaatgaaatgatgttttt 7672068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 642
Target Start/End: Complemental strand, 788594 - 788534
Alignment:
Q  582 tttcttaaaatataaaagttcacaaatcgctctttattccataaaaataatcgttagttta 642  Q
    |||| |||||||||||  |  |||||| ||||||||||||||||||||||| |||| ||||    
T  788594 tttcataaaatataaatatcaacaaatagctctttattccataaaaataatagttaattta 788534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 3082372 - 3082320
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||||| ||| ||||| |||||    
T  3082372 ataaaatgtaaaaaaattagtatgatttttataaacaatgaaatgatattttt 3082320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 19547704 - 19547756
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||||| ||| |||| ||||||    
T  19547704 ataaaatgtaaaaaaattagtatgatttttataaacaatgaaatgacgttttt 19547756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 35171384 - 35171332
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  35171384 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 35171332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 40650282 - 40650334
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  40650282 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 40650334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 643
Target Start/End: Original strand, 41902239 - 41902295
Alignment:
Q  587 taaaatataaaagttcacaaatcgctctttattccataaaaataatcgttagtttat 643  Q
    ||||||||||||||  |||||| ||||||| || ||||||||| |||||||| ||||    
T  41902239 taaaatataaaagtcgacaaatagctcttttttacataaaaatgatcgttagcttat 41902295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 42848397 - 42848345
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  42848397 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 42848345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 642
Target Start/End: Complemental strand, 20438933 - 20438877
Alignment:
Q  586 ttaaaatataaaagttcacaaatcgctctttattccataaaaataatcgttagttta 642  Q
    ||||||||||||  |  |||||| ||||||||||||||||||||||| |||| ||||    
T  20438933 ttaaaatataaatatcaacaaatagctctttattccataaaaataatagttaattta 20438877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 643
Target Start/End: Original strand, 24203157 - 24203213
Alignment:
Q  587 taaaatataaaagttcacaaatcgctctttattccataaaaataatcgttagtttat 643  Q
    ||||||||||||||  ||||||  ||||||||| ||||||||||||| ||| |||||    
T  24203157 taaaatataaaagtcaacaaatatctctttattacataaaaataatcattaatttat 24203213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 30863005 - 30863057
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  30863005 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 30863057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 42711146 - 42711198
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    |||||||||||||| ||||| ||||||||| |||| | ||| |||||||||||    
T  42711146 ataaaatgtaaaaaatttagtatgatttttctaaaaaatgaaatgatgttttt 42711198  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 1096429 - 1096481
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  1096429 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 1096481  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 4110766 - 4110818
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  4110766 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 4110818  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 573
Target Start/End: Original strand, 6848725 - 6848785
Alignment:
Q  514 ataaaatgtaaaaag-tttagcatgatttttataaacattgagatgatgtttttcttataa 573  Q
    ||||||||||||||  ||||| ||||||||| |||| | ||| ||||||||||||||||||    
T  6848725 ataaaatgtaaaaaaatttagtatgatttttctaaaaaatgaaatgatgtttttcttataa 6848785  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 26358744 - 26358692
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  26358744 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 26358692  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 45423825 - 45423877
Alignment:
Q  514 ataaaatgtaaaaagtttagcatgatttttataaacattgagatgatgttttt 566  Q
    ||||||||||||||  |||| |||||||||||||| | ||| |||||||||||    
T  45423825 ataaaatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttt 45423877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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