View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197AE17 (Length: 357)
Name: NF0197AE17
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197AE17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 44374801 - 44375150
Alignment:
| Q |
8 |
atgctatccaactacgactaaaaactaaagaagtgagagtggtatgagtttttaaagcatgtttaaagctagcaaagggtgagaaagagttactaaccca |
107 |
Q |
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| T |
44374801 |
atgctatccaactacgactaaaaaataaagaagtgagagtggtatgagtttgtaaagcatgtttaaagctagcaaagggtgagaaagagttactaaccca |
44374900 |
T |
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| Q |
108 |
agtgccatacgaactttaagctggactccatttgtaaagttgagaacataaacatcattgacaagtacaccaagagaagagtaatgatctgcatactcaa |
207 |
Q |
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| T |
44374901 |
agtgccatacgaactttaagctggactccatttgtaaagttgagaacataaacatcattgacaagtacaccaagagaagagtaatgatctgcatactcaa |
44375000 |
T |
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| Q |
208 |
cttcatagtcacattgatgctcgacttcacattcatagttatccgtctgatgcaccgatgcacaaaggggatgcctgcaggggaccaagtcattgctagg |
307 |
Q |
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| T |
44375001 |
cttcatagtcacattgatgctcgacttcacattcatagttatccgtctgatgcaccgatgcacaaaggggatgcctgcaggggaccaagtcattgctagg |
44375100 |
T |
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| Q |
308 |
ccggtaaagtggatgtggtgtctgaaaaataggcataagttattgaagat |
357 |
Q |
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| T |
44375101 |
ccggtaaagtggatgtggtgtctgaaaaataggcataagttattgaagat |
44375150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 39497967 - 39498093
Alignment:
| Q |
99 |
actaacccaagtgccatacgaactttaagctggactccatttgtaaagttgagaacataaacatcattgacaagtacaccaagagaagagtaatgatctg |
198 |
Q |
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|||||||| |||||||| | ||||||||| ||||||||||| || |||||||||| || |||||||| | |||||||||||| | ||||| ||||| | |
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| T |
39497967 |
actaaccccagtgccattctaactttaagttggactccattggtgaagttgagaaggtagacatcatttagaagtacaccaagggttgagtattgatcag |
39498066 |
T |
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| Q |
199 |
catactcaacttcatagtcacattgat |
225 |
Q |
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| T |
39498067 |
catacttaatttcgtagtcacattgat |
39498093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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