View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197AE22 (Length: 235)
Name: NF0197AE22
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197AE22 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 48255297 - 48255492
Alignment:
| Q |
10 |
acatatacataaccatcatgaatagttcttatacgatttaatcgaataccactgtctttcatcaga--aaagaataataggaggaacaaaatctatatag |
107 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48255297 |
acatatacataaccatcatgactagttcttatacgatttaatcgaataccactgtctttcatcagagaaaagaataataggaggaacaaaatctatatag |
48255396 |
T |
|
| Q |
108 |
acatgttgtggtgttgtgtttttcatttgaattgatagatttaccacaaaaccatattcaacttgactaataagtgatttcagttgaaattccaaa |
203 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48255397 |
acatgttgtggtgttgtgtttttcatttaaattgatagatttaccacaaaaccatattcaacttgactaataagtgatttcagttgaaattccaaa |
48255492 |
T |
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