View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197AE24 (Length: 584)
Name: NF0197AE24
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197AE24 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 584
Target Start/End: Complemental strand, 8279784 - 8279220
Alignment:
| Q |
8 |
atccaaaccctaattctccacaaccactgcatgtgtatggtgctcctggaggctttctttgcaatgagtgttcatgatccatcttaattattttttgtaa |
107 |
Q |
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| T |
8279784 |
atccgaaccctagttctccacaaccagtgcatgtgtatggggctcctggaggctttctttgcaatgagtgttcatgatccatcttaattattttttgtaa |
8279685 |
T |
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| Q |
108 |
atcctcttgaaaaaatgcaataaagaatttacaaagttaataaatgtttggtnnnnnnnntggaaaattaaacttatgt--ttactaatgcgttcggtnn |
205 |
Q |
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| T |
8279684 |
atcctgttgaaaaaatacaataaagaatttacaaagttaataaatgtttggtaaaagaaatggaaaattaaacttatgtgtttactaatgctttcggtaa |
8279585 |
T |
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| Q |
206 |
nnnnnnnnnnnnnnnnnnnctagtaatggttaaaagtgtatctaactatttggcatgaaatacgtacccaaatactttatactgttgatatcaattaaag |
305 |
Q |
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| T |
8279584 |
aaaaaataaaaaataaaaactagtaatggttaaaagtgtatctaactatttggcatgaaatacgtacccaaatactttatactgttgatatcaattaaag |
8279485 |
T |
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| Q |
306 |
atacataagttggctatttataatcaaga-attcttgtccaacaagtgacttcttttatcaattgttgataattttccttgaaattctcncaaaaaatac |
404 |
Q |
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| T |
8279484 |
atacataagttggctatttataggcaaaagaatcttgtcacacaagtgacttcttttatcaattattgataattttccttgaaattctctcaaaaaatac |
8279385 |
T |
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| Q |
405 |
gtaatttaatttaccaaatacttcgtatttatacgcatagttaccaagttgt--tcttttggcgcgtgtgacagaaatagttaattagtaagactgttgt |
502 |
Q |
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| T |
8279384 |
gtaatttaatttaccaaatacttcgta-ttatacgcatagttaccaagttgttgttttttggcgcgtgtg----------------agtaagactgttgt |
8279302 |
T |
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| Q |
503 |
cattgaagcttcgttggcggaaggagagattttctcttcaatttaattttttatttaacgttctcnttaatttcatttcctt |
584 |
Q |
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| T |
8279301 |
cattgaagcttcgttggcggaaggagagattttctcttcaatttaatttttttttaaacgttatctttaatttcatttcctt |
8279220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 8322368 - 8322269
Alignment:
| Q |
8 |
atccaaaccctaattctccacaaccactgcatgtgtatggtgctcctggaggctttctttgcaatgagtgttcatgatccatcttaattattttttgtaa |
107 |
Q |
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||||||| ||||||||| |||||| ||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||| || |||||||||||| |
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| T |
8322368 |
atccaaaacctaattctttacaaccgctgcatgtgtatggttctccaggaggcttcctttttaatgagtgttcatgatccatctcaaatattttttgtaa |
8322269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 8262599 - 8262646
Alignment:
| Q |
8 |
atccaaaccctaattctccacaaccactgcatgtgtatggtgctcctg |
55 |
Q |
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| T |
8262599 |
atccaaaccctaattctccacaaccactgcatgtgtatggtgctcctg |
8262646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 468 - 551
Target Start/End: Complemental strand, 8270667 - 8270582
Alignment:
| Q |
468 |
gtgtgacagaaatagt--taattagtaagactgttgtcattgaagcttcgttggcggaaggagagattttctcttcaatttaattt |
551 |
Q |
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| T |
8270667 |
gtgtgacaaaaatagtattaattagtaagactgttgtcattgaagcttcgtcggcaaaaggacggattttctcttcaatttcattt |
8270582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 376
Target Start/End: Complemental strand, 8270746 - 8270704
Alignment:
| Q |
334 |
aattcttgtccaacaagtgacttcttttatcaattgttgataa |
376 |
Q |
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| T |
8270746 |
aattcttgtccaacaagtgacttcttttatcaattgttgataa |
8270704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 8270813 - 8270769
Alignment:
| Q |
229 |
taatggttaaaagtgtatctaactatttggcatgaaatacgtacc |
273 |
Q |
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| T |
8270813 |
taatgcttaaaagtgtatctaactatttggcatgaaatacgtacc |
8270769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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