View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197AE27 (Length: 499)
Name: NF0197AE27
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197AE27 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 40360163 - 40359870
Alignment:
| Q |
10 |
acaattacaaagagaaaagggaataagaacaagaaatttgggaaagtgagaactctactaaaggttaagtcatgctaccacccaatatcttcctgtacag |
109 |
Q |
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| T |
40360163 |
acaattacaaagagaaaagggaataagaacaagaaatttgggaaagtgagaactctactaaaggttaagtcatgctaccacccaatatcttcctgtacag |
40360064 |
T |
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| Q |
110 |
gtgaacacagaagccgtcttgttgttgcaaaagcagcaaattgatcatatactatatgatattattacttgctacgtactaggtattagaagaatgaagc |
209 |
Q |
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| T |
40360063 |
gtgaacacagaagccgtcttgttgctgcaaaagcagcaaattgatc--atactatatgatattattacttgctacgtactaggtattagaagaatgaagc |
40359966 |
T |
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| Q |
210 |
agcttgtaataatttcatttttctccctc---nnnnnnnnnctattactttttagccatttttggcttgtttaatcgattcaattccttatgaatc |
302 |
Q |
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| T |
40359965 |
agcttgtaataatttcatttttctccctcttttttttttttctattactttttagccatttttggcttgtttaatcgattcaattccttatgaatc |
40359870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 319 - 499
Target Start/End: Complemental strand, 40359876 - 40359691
Alignment:
| Q |
319 |
atgaatcagaagaattagaccacaacacatggttgtctttgttcattatgtgaaatgcctagtac-acatttttctctggttctagcta----tgatgta |
413 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
40359876 |
atgaatcagaagaatcagaccacaacacatggttgtctttgttcattatgtgaaatgcctagtactacatttttctctggttctagctagctatgatgta |
40359777 |
T |
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| Q |
414 |
catatcttcatgtaaactagttgttgagccatttactacatatagggcatgatccaaatcataacaaatgtttgttgtctgttaat |
499 |
Q |
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| T |
40359776 |
catatcttcatgtaaactagttgttgagccatttactacatatagggcatgatccaaatcataacaaatgtttgttgtctgttaat |
40359691 |
T |
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