View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197AE9 (Length: 569)
Name: NF0197AE9
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197AE9 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 130 - 553
Target Start/End: Complemental strand, 8765336 - 8764917
Alignment:
| Q |
130 |
gacatcttcctgccatcccgaaccactcgagacaagccctctgcaaaccaatatgaagagaaattcgacttggagccgagcaaagaaaccccttttccac |
229 |
Q |
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| T |
8765336 |
gacatcttcctgccatcccaaaccactcaagacaagccctctgcaaaccaatctgaagagaaattcgacttggagccgagcaaagaaaccccttttccac |
8765237 |
T |
|
| Q |
230 |
cagggcgaaggagatttcagagacctagctctcatcccaaaattacaagacgtcgtggcagacccatacctggctgaaaagatactacgccacaagccat |
329 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8765236 |
cagggcgaaggagatttcagggacctagctctcatcccaaaattacaagacatcgcggcagacccatacctggatgaaaagatactacgccacaagccat |
8765137 |
T |
|
| Q |
330 |
caccctccgctagaatcctccacctctagttaccaaacatggccaagttaacaagatctatctattacctccaaagcaccctctcttttcagcttacaaa |
429 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8765136 |
caccctccgctagaatcctccacctccagttaccaaacatggccaagttaacaagatctatctcttacctccaaagcaccctctcttttcagcttacaaa |
8765037 |
T |
|
| Q |
430 |
tttttgaccagctagcccaagatattttattccctccctaagatcctccccatnnnnnnnnnnncgtttttgtaggcgaacaatctgtttccaaaccttc |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
8765036 |
tttttgaccagctagcccaagatattttattccctcccttagatcctcccca----caaaaaaacttctttgtaggcgaacaatctgtttccaaaccttc |
8764941 |
T |
|
| Q |
530 |
accggcattgtcataaatgataag |
553 |
Q |
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| T |
8764940 |
accggcattgtcataaatgataag |
8764917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 8765746 - 8765625
Alignment:
| Q |
10 |
ggccctatcgaggataacttgcaggattaactttaaagggtgcccaactatgccaaatcagatcaaccgggtcaacaaccgcctcagacttcccacccta |
109 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |
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| T |
8765746 |
ggccctatcgaggataacttgcaggatgaactttagagggtgcccaactatgccaaatcagatcaagcgggtcaacaaccgcctcaaacttcccacccaa |
8765647 |
T |
|
| Q |
110 |
ttgaattgaggcagcggaaaga |
131 |
Q |
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||||||||||||||| |||||| |
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| T |
8765646 |
ttgaattgaggcagctgaaaga |
8765625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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