View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_high_11 (Length: 254)
Name: NF0197_1D_high_11
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 35258682 - 35258913
Alignment:
| Q |
17 |
ctgtgcatagttagacagaagaagtgaattgtaaggtgcaagatttatatgctttttgtaataagcatcagttttctcatattcctcatattgatcccct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35258682 |
ctgtgcatagttagacagaagaagtgaattgtaaggtgcaagatttatatgctttttgtaataagcatcagttttctcatattcctcatattgatcccct |
35258781 |
T |
|
| Q |
117 |
tcaatctccacagaaacaggactcagaaacttcatcattgtttcatgatccaaatcctcacccctcaattctctttgcatctttgaagcttcctccaaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35258782 |
tcaatctccacagaaacaggactcagaaacttcatcattgtttcatgatccaaatcctcacccctcaattctctttgtatctttgaagcttcctccaaca |
35258881 |
T |
|
| Q |
217 |
taaaattccacaacttttcttcctcttctgtc |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
35258882 |
taaaattccacaacttttcttcctcttctgtc |
35258913 |
T |
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