View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0197_1D_high_12 (Length: 251)

Name: NF0197_1D_high_12
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0197_1D_high_12
NF0197_1D_high_12
[»] chr7 (1 HSPs)
chr7 (43-231)||(6502768-6502956)
[»] chr3 (5 HSPs)
chr3 (1-49)||(10030935-10030983)
chr3 (1-49)||(10125886-10125934)
chr3 (1-49)||(10259659-10259707)
chr3 (89-190)||(37549926-37550028)
chr3 (95-131)||(48507457-48507493)
[»] chr8 (2 HSPs)
chr8 (89-190)||(40182691-40182793)
chr8 (88-190)||(38341831-38341934)
[»] chr1 (1 HSPs)
chr1 (90-188)||(19607204-19607304)
[»] chr5 (1 HSPs)
chr5 (150-191)||(29465757-29465798)
[»] chr2 (2 HSPs)
chr2 (106-190)||(41873557-41873642)
chr2 (149-190)||(43038447-43038488)
[»] chr4 (2 HSPs)
chr4 (96-143)||(29765808-29765856)
chr4 (98-130)||(51468602-51468634)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 6502768 - 6502956
Alignment:
Q  43 gctgggtcattctcttggttaacaatgtaagggatcatcttctgaatattgtaaaggggaacccttggaggagagattctctcatattcattcttatttt 142  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6502768 gctgggtcattcttttggttaacagtgtaagggatcatcttctgaatattgtaaaggggaacccttagaggagagattctctcatattcattcttatttt 6502867  T
Q  143 catattcaagtgttctttctattccactcaattcttgggttcctaacagcatattgattggtaaaaaactgagattgatgagctatgtg 231  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6502868 catattcaagttttctttctattccgctcaattcttgggttcctaacagcatattgattggtaaaaaactgagattgatgagctatgtg 6502956  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10030935 - 10030983
Alignment:
Q  1 tcatatacttatcaccaaatgattattacatttatctcttttgctgggt 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10030935 tcatatacttatcaccaaatgattattacatttatctcttttgttgggt 10030983  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10125886 - 10125934
Alignment:
Q  1 tcatatacttatcaccaaatgattattacatttatctcttttgctgggt 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10125886 tcatatacttatcaccaaatgattattacatttatctcttttgttgggt 10125934  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10259659 - 10259707
Alignment:
Q  1 tcatatacttatcaccaaatgattattacatttatctcttttgctgggt 49  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||    
T  10259659 tcatatacttatcagcaaatgattattacatttatctcttttgttgggt 10259707  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 37549926 - 37550028
Alignment:
Q  89 tattgtaaaggggaacc-cttggaggagagattctctcatattcattcttattttcatattcaagtgttctttctattccactcaattcttgggttccta 187  Q
    |||||| |||||||| | ||||||||||||||| |||| |||||  || |||||    | | ||||||||||||||||||| || |||||||||||||||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  188 aca 190  Q
    |||    
T  37550026 aca 37550028  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 48507457 - 48507493
Alignment:
Q  95 aaaggggaacccttggaggagagattctctcatattc 131  Q
    |||||| |||||||||||||||||||||||| |||||    
T  48507457 aaagggaaacccttggaggagagattctctcctattc 48507493  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 40182793 - 40182691
Alignment:
Q  89 tattgtaaaggggaacccttggaggagagattctctcatattcattcttattttc-atattcaagtgttctttctattccactcaattcttgggttccta 187  Q
    |||||| || ||||| ||||  ||||||||||||||| | ||| |||||||||||  ||||||| |||||||||| ||||| ||||||||| ||| ||||    
T  40182793 tattgtgaaagggaaacctttaaggagagattctctcctgttctttcttattttctttattcaattgttctttctgttccattcaattcttaggtcccta 40182694  T
Q  188 aca 190  Q
    |||    
T  40182693 aca 40182691  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 38341934 - 38341831
Alignment:
Q  88 atattgtaaaggggaa-cccttggaggagagattctctcatattcattcttattttcatattcaa-gtgttctttctattccactcaattcttgggttcc 185  Q
    |||||||||||||||| ||||||||||||||||| ||||  |||| ||| ||||| | || | || ||||||||||||||||| |||||| ||||||||     
T  38341934 atattgtaaaggggaaacccttggaggagagattatctcccattctttcctattt-cttagtaaaagtgttctttctattccattcaattgttgggttct 38341836  T
Q  186 taaca 190  Q
    |||||    
T  38341835 taaca 38341831  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 19607304 - 19607204
Alignment:
Q  90 attgtaaaggggaa-cccttggaggagagattctctcatattcattcttattttcat-attcaagtgttctttctattccactcaattcttgggttccta 187  Q
    ||||| |||||||| |||||||||||||||||||||| || || ||||||||||| | ||| || |||||||| |||||||  |||||  ||||||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttccta 19607205  T
Q  188 a 188  Q
    |    
T  19607204 a 19607204  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 29465757 - 29465798
Alignment:
Q  150 aagtgttctttctattccactcaattcttgggttcctaacag 191  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  29465757 aagtgttctttctattccattcaattcttggattcctaacag 29465798  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 41873642 - 41873557
Alignment:
Q  106 cttggaggagagattctctcatattcattcttattttcatattcaagtg-ttctttctattccactcaattcttgggttcctaaca 190  Q
    ||||||||||||||| |||| |  || ||||||||||| || |  |||| |||||||||||||| |||  ||||||||||||||||    
T  41873642 cttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 43038488 - 43038447
Alignment:
Q  149 caagtgttctttctattccactcaattcttgggttcctaaca 190  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  43038488 caagtgtcctttctattccactccattcatgggttcctaaca 43038447  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 29765856 - 29765808
Alignment:
Q  96 aaggggaacccttggaggagag-attctctcatattcattcttattttc 143  Q
    ||||||||||||||||||||||  ||||||| ||||| |||||||||||    
T  29765856 aaggggaacccttggaggagagttttctctcctattctttcttattttc 29765808  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 51468634 - 51468602
Alignment:
Q  98 ggggaacccttggaggagagattctctcatatt 130  Q
    ||||||| |||||||||||||||||||||||||    
T  51468634 ggggaacacttggaggagagattctctcatatt 51468602  T

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