View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0197_1D_high_2 (Length: 529)
Name: NF0197_1D_high_2
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0197_1D_high_2
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 183 - 506
Target Start/End: Original strand, 8036190 - 8036514
Alignment:
Q
183
tacgtagtcttgatattgtttcgttgaggacggtaaacaaccatcaaataaccgtcaaagtgacctgttataccttcctcgtttggttcacccgaaataa
282
Q
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
8036190
tacgtagtcttgatattgtttcgttgaggacggtaaacaaccattaaataaccgtcaaagtggcctgttataccttcctcgtttggttcacccgaaataa
8036289
T
Q
283
acattaaataatatataatactactacttgaaaacaccatagaccaaagttattgtaaagtttgaaaaaccttgtggattagtagta-tttactcaaaca
381
Q
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||
T
8036290
acattaatttatatataatactactacttgaaaacaccatagaccaaagttattgtaaaatttgaaaaaccttgtgtattagtagtattttacttaaaca
8036389
T
Q
382
ttctagtgagatcagaaacaacaaagctggttgataatttctccatggttaagaaaactgtgttgaaggttaatatcgattgtccaaaatgcaaaaagaa
481
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
8036390
ttctagtgagatcagaaacaacaaagctggttgataatttctccatggttaagaaaactgtattgaaggttaatatcgattgtccaaaatgcaaaaagaa
8036489
T
Q
482
actcatcaaaactgtctcttctctt
506
Q
|||||||||||||||||||||||||
T
8036490
actcatcaaaactgtctcttctctt
8036514
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 8036023 - 8036144
Alignment:
Q
18
taattatttagagtaattccatttctgttttcaagcaacgattatgcaagttgctcaaaatcacaaaaggcaattactatcaccgtattcaaaaaaccaa
117
Q
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
8036023
taattatttagagtaattccatttctgttttcaagca-ctataatgcaagttgctcaaaatcacaaaaggcaattactatcaccgtattcaaaaaaccaa
8036121
T
Q
118
taaggatgattgaaacattatta
140
Q
||||||||||| |||||||||||
T
8036122
taaggatgatttaaacattatta
8036144
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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