View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0197_1D_high_3 (Length: 498)
Name: NF0197_1D_high_3
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_high_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 95 - 498
Target Start/End: Complemental strand, 24865558 - 24865155
Alignment:
| Q |
95 |
ctattgaagttgaaaatctagatgagtttggaagagtggaattgatagaagttgggtattatggggtgaccaagtgccgcatcgaattatattaaatgca |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24865558 |
ctattgaagttgaaaatctagatgagtttggaagagtggaattgatagaagttgggtattatggggtgaccaagtgccgcatcgaattatattgaatgca |
24865459 |
T |
|
| Q |
195 |
tgttggagtacttaagtagcttagttcttccccaggacagctaacttctgaatgttttccaagtgtgtgggtgcttgacaaatagtactgaatctggttg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24865458 |
tgttggagtacttaagtagcttagttcttccccaggacagctaacttctgaatgttttccaagtgtgtgggtgcttaacaaatagtactgaatctggttg |
24865359 |
T |
|
| Q |
295 |
caaatgtctcgtaaacgttacctacaaaggggctaactgaaagaaacaaaagaacacaagtgctgtatggtacagttgcgctatgatttgagatcattcc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24865358 |
caaatgtctcgtaaacgttacctacaaaggggctaactgaaagaaacaaaaaaacacaagtgctgtatggtacagttgcgctatgatttgagatcattcc |
24865259 |
T |
|
| Q |
395 |
ctattttggatggatatagttcttcacgtgtaattcattatggattcattttacgatatttataaagtgttatgcttgattttcaaatattttcataacc |
494 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24865258 |
ctattttgggtggatatagttcttcacgtgtaattcattatggattcattttacgatatttataaagtgttatgcttgattttcaaatattttcataacc |
24865159 |
T |
|
| Q |
495 |
atga |
498 |
Q |
| |
|
|||| |
|
|
| T |
24865158 |
atga |
24865155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1542 times since January 2019
Visitors: 2192