View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_high_5 (Length: 430)
Name: NF0197_1D_high_5
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 22 - 416
Target Start/End: Original strand, 19821987 - 19822381
Alignment:
| Q |
22 |
attacaacaacaaagataagtatttttcttcccccttttctctcnnnnnnnccaatcctctgctaaactttgtgtgaaatgcaaaataaaacattgataa |
121 |
Q |
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| T |
19821987 |
attacaacaacaaagataagtatttttcttcccccttttctctctttttttccaatcctctgctaaactttgtgtgaaatgcaaaataaaacattgataa |
19822086 |
T |
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| Q |
122 |
aactaaaaggctgattcaaactaaaagaatatttggatgaggttttattagctatggattaatttgaaaagcattatttggtttctactttttcctacac |
221 |
Q |
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| T |
19822087 |
aactaaaaggctgattcaaactaaaagaatatttggatgaggttttattagctatgtattaatttgaaaagcattatttggtttctactttttcctacac |
19822186 |
T |
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| Q |
222 |
tctcttttaaaatttgaaaaaaccgttatagcaatgaggggatatccatgattgcaagggtaatacaattctgaaccgtttatttatttcannnnnnnna |
321 |
Q |
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| T |
19822187 |
tctcttttaaaatttgaaaaaaccgttatagcaatgaggggatatccatgattgcatgggtaatacaattctaaaccgtttatttatttcatttttttta |
19822286 |
T |
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| Q |
322 |
ttataagaacatacgtgtttacttcaattaattttataaatagtgactttgatgtgtaaaatatgcttttgattaatttttgtctgatttgtgtt |
416 |
Q |
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| T |
19822287 |
ttataagaacatacgtgtttacttcaattaattttataaatagtgactttgatgtgtaaaatatgcttttgattaatttttgtctgatttgtgtt |
19822381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 19897187 - 19897227
Alignment:
| Q |
25 |
acaacaacaaagataagtatttttcttcccccttttctctc |
65 |
Q |
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| T |
19897187 |
acaataacaaagacaagtatttttcttcccccttttctctc |
19897227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 2972981 - 2973043
Alignment:
| Q |
139 |
aaactaaaagaatatttggatgaggttttattagctatggattaatttgaaaagcattatttg |
201 |
Q |
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|||| |||| |||||| |||| |||||| | ||||||||| ||||||||||||||||||||| |
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| T |
2972981 |
aaaccaaaacaatattaagatggggttttctcagctatggactaatttgaaaagcattatttg |
2973043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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