View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_low_1 (Length: 576)
Name: NF0197_1D_low_1
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_low_1 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 199 - 467
Target Start/End: Original strand, 9545964 - 9546232
Alignment:
| Q |
199 |
ccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattttcttttcagtaa |
298 |
Q |
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| T |
9545964 |
ccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagcaaattctctaaaacaaattggacattcatgaattttcttttcactaa |
9546063 |
T |
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| Q |
299 |
cattgatannnnnnncaatgttaattttttcatgttgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttcttgtgactcgctct |
398 |
Q |
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| T |
9546064 |
cattgatatttttttcaatgttaattttttcatgatgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttcttgtgactcgctct |
9546163 |
T |
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| Q |
399 |
gtgtccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtac |
467 |
Q |
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| T |
9546164 |
gtgtccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtac |
9546232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 9545844 - 9545930
Alignment:
| Q |
73 |
ggagcaggaaaatttagatctaacaaactatctccaacattcgcggaaactcgagcaacctcgacgttccttctaaccattgttgtt |
159 |
Q |
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| T |
9545844 |
ggagcaggaaaatttagatctaacaaactatctccaacattcgcggaaactcgagcaaccttgacgttccttctaaccattgttgtt |
9545930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 19594 - 19675
Alignment:
| Q |
213 |
atgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattttcttttca |
294 |
Q |
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| T |
19594 |
atgtgttcttttgtgtccaccaagtgcttgacccgaattaaatactcgaaaacataccggacattcatgaactttcttttca |
19675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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