View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_low_10 (Length: 297)
Name: NF0197_1D_low_10
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 43596577 - 43596847
Alignment:
| Q |
23 |
aacttttaacctattggccaatggccaaccatgttaacaacaccttgtgtatacaaacaactaaagaaataggtttgaagttcaacaaggattgttgact |
122 |
Q |
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| T |
43596577 |
aacttttaacctattggccaatggccaaccatgttaacaacaccttgtgtatacaaacaactaaagaaataggtttgaagttcaacaaggattgttgact |
43596676 |
T |
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| Q |
123 |
atcctttttcagaatgaacacataaatgtacaatttaatcctttgaaaagttttccgctaaaatggtgcgggttcaaacatgcaccccaaattaaatata |
222 |
Q |
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| T |
43596677 |
atcctttttcagaatgaacacataaatgtacaatttaatcctttgaaaagttttccgctaaaatggtgcgggttcaaacatgcacctcaaattaaatata |
43596776 |
T |
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| Q |
223 |
tcaaactagatcgtcaacccgtgcgacgcacgggtcatattcaccgtaaaatttgggatgtaatatatcat |
293 |
Q |
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| T |
43596777 |
ccaaactagatcgtcaacccgtgcgacgcacgggtcatattccccgtaaaatttgggatgtagtatatcat |
43596847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 14833157 - 14833223
Alignment:
| Q |
227 |
actagatcgtcaacccgtgcgacgcacgggtcatattcaccgtaaaatttgggatgtaatatatcat |
293 |
Q |
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| T |
14833157 |
actagatcgtcgatccgtgcgagtcacgggtcatatttacggtaaaatttgggatgtagtatatcat |
14833223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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