View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_low_2 (Length: 530)
Name: NF0197_1D_low_2
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_low_2 |
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| [»] scaffold0896 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 96 - 523
Target Start/End: Original strand, 4149434 - 4149861
Alignment:
| Q |
96 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaacaatgaaaacac |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4149434 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaacaatgaaaacac |
4149533 |
T |
|
| Q |
196 |
ataatatcgacgaaaataaagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctg |
295 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4149534 |
ataatatcgatgaaaatgaagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctg |
4149633 |
T |
|
| Q |
296 |
tgttctgtccgcgagatggaagaatctctggaagtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtg |
395 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||| |
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| T |
4149634 |
cgttttgtccacgagatggaagaatctctggaagtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtg |
4149733 |
T |
|
| Q |
396 |
tctcaatttttgtatctacgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataa |
495 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||| |||||||||| |
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| T |
4149734 |
tatcaatttttgtatctacgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcaactgggttataa |
4149833 |
T |
|
| Q |
496 |
aatatgcatttgaccacggtgtccagct |
523 |
Q |
| |
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|||| ||||||||||||||||||||||| |
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| T |
4149834 |
aatacgcatttgaccacggtgtccagct |
4149861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 96 - 523
Target Start/End: Original strand, 4165205 - 4165633
Alignment:
| Q |
96 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaac-aatgaaaaca |
194 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4165205 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaaactttgccgcagcacaattgtttctagcttctgaaaccaatgaaaaca |
4165304 |
T |
|
| Q |
195 |
cataatatcgacgaaaataaagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacct |
294 |
Q |
| |
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||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4165305 |
cataatatcgatgaaaatgaagacagaatcagtgatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacct |
4165404 |
T |
|
| Q |
295 |
gtgttctgtccgcgagatggaagaatctctggaagtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgt |
394 |
Q |
| |
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| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||| |
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| T |
4165405 |
gcgttttgtccacgagatggaagaatctctggaagtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgt |
4165504 |
T |
|
| Q |
395 |
gtctcaatttttgtatctacgtgataacaaaaccgcactgcacactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttata |
494 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||| |||||||||| |
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| T |
4165505 |
gtatcaatttttgtatctacgtgataacaaaaccgcactgcacactctcgatcttcaccgcgatggtgtcatctggcctggctacctcatgtgggttata |
4165604 |
T |
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| Q |
495 |
aaatatgcatttgaccacggtgtccagct |
523 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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| T |
4165605 |
aaatacgcatttgaccacggtgtccagct |
4165633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 4148754 - 4148805
Alignment:
| Q |
96 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaa |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4148754 |
taactactacaacaacggagcagtagggttttgcccactctcgggtatcaaa |
4148805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 32413582 - 32413704
Alignment:
| Q |
207 |
gaaaataaagacagaatcagagatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccg |
306 |
Q |
| |
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|||||| |||||||| |||| |||||| | ||||||| ||||||| |||||| || ||||||||||||| | ||||||||||| || || ||||| |
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| T |
32413582 |
gaaaatcaagacagactcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtcca |
32413681 |
T |
|
| Q |
307 |
cgagatggaagaatctctggaag |
329 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
32413682 |
caagatggaagaatctctggaag |
32413704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 330
Target Start/End: Complemental strand, 7115645 - 7115543
Alignment:
| Q |
228 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
327 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
7115645 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7115546 |
T |
|
| Q |
328 |
agt |
330 |
Q |
| |
|
||| |
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|
| T |
7115545 |
agt |
7115543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 330
Target Start/End: Complemental strand, 7120717 - 7120615
Alignment:
| Q |
228 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
327 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
7120717 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7120618 |
T |
|
| Q |
328 |
agt |
330 |
Q |
| |
|
||| |
|
|
| T |
7120617 |
agt |
7120615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 330
Target Start/End: Complemental strand, 7124121 - 7124019
Alignment:
| Q |
228 |
gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga |
327 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
7124121 |
gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga |
7124022 |
T |
|
| Q |
328 |
agt |
330 |
Q |
| |
|
||| |
|
|
| T |
7124021 |
agt |
7124019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 8656740 - 8656649
Alignment:
| Q |
238 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
329 |
Q |
| |
|
||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| || || ||||||||||||||||||||| |
|
|
| T |
8656740 |
attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag |
8656649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 19658395 - 19658349
Alignment:
| Q |
282 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
328 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
19658395 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19658349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 19675234 - 19675188
Alignment:
| Q |
282 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
328 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
19675234 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19675188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 2256 - 2321
Alignment:
| Q |
265 |
ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt |
330 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||| || || |||||||||||||||||||||| |
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|
| T |
2256 |
ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagt |
2321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 1473 - 1537
Alignment:
| Q |
265 |
ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
329 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||| || || ||||||||||||||||||||| |
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|
| T |
1473 |
ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag |
1537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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